Program Official

Principal Investigator

Fred R
Hirsch
Awardee Organization

Icahn School Of Medicine At Mount Sinai
United States

Fiscal Year
2024
Activity Code
U54
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

Vulnerability of SARS- CoV-2 Infection in Lung Cancer Based on Serological Antibody Analyses

The Mount Sinai U54 continues to accrue new lung cancer (LC) patients to its large, highly annotated longitudinal cohort with routine specimen collection. Updated research focus areas include: 1) the ability of patients with lung cancer to maintain robust immune responses to infections and/or vaccinations related to novel variants; 2) the long-term health consequences of SARS-CoV-2 infection in patients with lung cancer; and 3) biologic factors that influence SARS-CoV-2 susceptibility using in vitro modeling. The magnitude, quality, breadth and durability of the systemic and mucosal immune responses elicited by influenza virus and RSV vaccinations will be determined in comparison to SARS-CoV-2 in LC patients. Key areas to be addressed here include the effects of: vaccine platform, timing of vaccination, concordance or discordance of patient immune response to differing vaccines, a more detailed understanding of the effects of cancer treatment, and the correlation between cellular and antibody response. The Mount Sinai finding that vaccination for influenza was associated with a subsequent induction of SARS-CoV-2 antispike Abs in our patients will be validated using patient specimens from collaborators within the Pooling Project. The Mount Sinai clinical team will continue to Investigate socioeconomic and demographic associations with the risk of compromised immune responses and/or severe infection. Additionally, residual plasma from select patients will be used to determine whether patients who experienced a SARS-CoV-2 infection retain molecular evidence of viral infection. Evidence for a persistent reservoir of viral RNA and/or proteins will be determined by highly sensitive RT-qPCR and ELISA-based assays, and the duration of persistence after infection will be correlated with specific clinical symptoms.

Publications

  • Thorne LG, Bouhaddou M, Reuschl AK, Zuliani-Alvarez L, Polacco B, Pelin A, Batra J, Whelan MVX, Hosmillo M, Fossati A, Ragazzini R, Jungreis I, Ummadi M, Rojc A, Turner J, Bischof ML, Obernier K, Braberg H, Soucheray M, Richards A, Chen KH, Harjai B, Memon D, Hiatt J, Rosales R, McGovern BL, Jahun A, Fabius JM, White K, Goodfellow IG, Takeuchi Y, Bonfanti P, Shokat K, Jura N, Verba K, Noursadeghi M, Beltrao P, Kellis M, Swaney DL, García-Sastre A, Jolly C, Towers GJ, Krogan NJ. Evolution of enhanced innate immune evasion by SARS-CoV-2. Nature. 2022 Feb;602(7897):487-495. Epub 2021 Dec 23. PMID: 34942634
  • Escalera A, García-Sastre A, Aydillo T. Protocol to isolate and assess spike protein cleavage in SARS-CoV-2 variants obtained from clinical COVID-19 samples. STAR protocols. 2022 Sep 16;3(3):101502. Epub 2022 Jun 13. PMID: 35776647
  • Wajnberg A, Amanat F, Firpo A, Altman DR, Bailey MJ, Mansour M, McMahon M, Meade P, Mendu DR, Muellers K, Stadlbauer D, Stone K, Strohmeier S, Simon V, Aberg J, Reich DL, Krammer F, Cordon-Cardo C. Robust neutralizing antibodies to SARS-CoV-2 infection persist for months. Science (New York, N.Y.). 2020 Dec 4;370(6521):1227-1230. Epub 2020 Oct 28. PMID: 33115920
  • Siddiq MM, Chan AT, Miorin L, Yadaw AS, Beaumont KG, Kehrer T, White KM, Cupic A, Tolentino RE, Hu B, Stern AD, Tavassoly I, Hansen J, Martinez P, Dubois N, Schaniel C, Iyengar-Kapuganti R, Kukar N, Giustino G, Sud K, Nirenberg S, Kovatch P, Goldfarb J, Croft L, McLaughlin MA, Argulian E, Lerakis S, Narula J, García-Sastre A, Iyengar R. Physiology of cardiomyocyte injury in COVID-19. medRxiv : the preprint server for health sciences. 2020 Nov 16. PMID: 33200140
  • Holmes EC, Krammer F, Goodrum FD. Virology-The next fifty years. Cell. 2024 Sep 19;187(19):5128-5145. PMID: 39303682
  • Duty JA, Kraus T, Zhou H, Zhang Y, Shaabani N, Yildiz S, Du N, Singh A, Miorin L, Li D, Stegman K, Ophir S, Cao X, Atanasoff K, Lim R, Mena I, Bouvier NM, Kowdle S, Carreño JM, Rivero-Nava L, Raskin A, Moreno E, Johnson S, Rathnasinghe R, Pai CI, Kehrer T, Cabral EP, Jangra S, Healy L, Singh G, Warang P, Simon V, Sordillo EM, van Bakel H, Liu Y, Sun W, Kerwin L, Teijaro J, Schotsaert M, Krammer F, Bresson D, García-Sastre A, Fu Y, Lee B, Powers C, Moran T, Ji H, Tortorella D, Allen R. Discovery and intranasal administration of a SARS-CoV-2 broadly acting neutralizing antibody with activity against multiple Omicron subvariants. Med (New York, N.Y.). 2022 Oct 14;3(10):705-721.e11. Epub 2022 Aug 8. PMID: 36044897
  • Yin X, Riva L, Pu Y, Martin-Sancho L, Kanamune J, Yamamoto Y, Sakai K, Gotoh S, Miorin L, De Jesus PD, Yang CC, Herbert KM, Yoh S, Hultquist JF, García-Sastre A, Chanda SK. MDA5 Governs the Innate Immune Response to SARS-CoV-2 in Lung Epithelial Cells. Cell reports. 2021 Jan 12;34(2):108628. PMID: 33440148
  • Thorne LG, Bouhaddou M, Reuschl AK, Zuliani-Alvarez L, Polacco B, Pelin A, Batra J, Whelan MVX, Ummadi M, Rojc A, Turner J, Obernier K, Braberg H, Soucheray M, Richards A, Chen KH, Harjai B, Memon D, Hosmillo M, Hiatt J, Jahun A, Goodfellow IG, Fabius JM, Shokat K, Jura N, Verba K, Noursadeghi M, Beltrao P, Swaney DL, Garcia-Sastre A, Jolly C, Towers GJ, Krogan NJ. Evolution of enhanced innate immune evasion by the SARS-CoV-2 B.1.1.7 UK variant. bioRxiv : the preprint server for biology. 2021 Jun 7. PMID: 34127972
  • Zhang K, Miorin L, Makio T, Dehghan I, Gao S, Xie Y, Zhong H, Esparza M, Kehrer T, Kumar A, Hobman TC, Ptak C, Gao B, Minna JD, Chen Z, García-Sastre A, Ren Y, Wozniak RW, Fontoura BMA. Nsp1 protein of SARS-CoV-2 disrupts the mRNA export machinery to inhibit host gene expression. Science advances. 2021 Feb 5;7. (6). Print 2021 Feb. PMID: 33547084
  • Aydillo T, Rombauts A, Stadlbauer D, Aslam S, Abelenda-Alonso G, Escalera A, Amanat F, Jiang K, Krammer F, Carratala J, García-Sastre A. Immunological imprinting of the antibody response in COVID-19 patients. Nature communications. 2021 Jun 18;12(1):3781. PMID: 34145263
  • Pardi N, Krammer F. mRNA vaccines for infectious diseases - advances, challenges and opportunities. Nature reviews. Drug discovery. 2024 Nov;23(11):838-861. Epub 2024 Oct 4. PMID: 39367276
  • El Jamal SM, Pujadas E, Ramos I, Bryce C, Grimes ZM, Amanat F, Tsankova NM, Mussa Z, Olson S, Salem F, Miorin L, Aydillo T, Schotsaert M, Albrecht RA, Liu WC, Marjanovic N, Francoeur N, Sebra R, Sealfon SC, García-Sastre A, Fowkes M, Cordon-Cardo C, Westra WH. Tissue-based SARS-CoV-2 detection in fatal COVID-19 infections: Sustained direct viral-induced damage is not necessary to drive disease progression. Human pathology. 2021 Aug;114:110-119. Epub 2021 May 4. PMID: 33961839
  • Cohen P, DeGrace EJ, Danziger O, Patel RS, Barrall EA, Bobrowski T, Kehrer T, Cupic A, Miorin L, García-Sastre A, Rosenberg BR. Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single cell RNA sequencing. bioRxiv : the preprint server for biology. 2023 Feb 23. PMID: 34845443
  • Salem Omar AM, Alam L, Talebi S, García-Sastre A, Narula J, Argulian E. Right Ventricular Abnormality in Patients Hospitalized With COVID-19 Infection During Omicron Variant Surge. The American journal of cardiology. 2022 Jun 15;173:158-160. Epub 2022 Apr 19. PMID: 35459461
  • Babady NE, Burckhardt RM, Krammer F, Moore PL, Enquist LW. Building a Resilient Scientific Network for COVID-19 and Beyond. mBio. 2022 Oct 26;13(5):e0222322. Epub 2022 Sep 20. PMID: 36125317
  • Rolfo C, Meshulami N, Russo A, Krammer F, García-Sastre A, Mack PC, Gomez JE, Bhardwaj N, Benyounes A, Sirera R, Moore A, Rohs N, Henschke CI, Yankelevitz D, King J, Shyr Y, Bunn PA Jr, Minna JD, Hirsch FR. Lung Cancer and Severe Acute Respiratory Syndrome Coronavirus 2 Infection: Identifying Important Knowledge Gaps for Investigation. Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer. 2022 Feb;17(2):214-227. Epub 2021 Nov 10. PMID: 34774792
  • Cohen P, DeGrace EJ, Danziger O, Patel RS, Barrall EA, Bobrowski T, Kehrer T, Cupic A, Miorin L, García-Sastre A, Rosenberg BR. Unambiguous detection of SARS-CoV-2 subgenomic mRNAs with single-cell RNA sequencing. Microbiology spectrum. 2023 Sep 7;11(5):e0077623. Epub 2023 Sep 7. PMID: 37676044
  • Kehrer T, García-Sastre A, Miorin L. Control of Innate Immune Activation by Severe Acute Respiratory Syndrome Coronavirus 2 and Other Coronaviruses. Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research. 2021 Jun;41(6):205-219. PMID: 34161170
  • Rodilla AM, Valanparambil RM, Mack PC, Hsu CY, Cagan J, Tavolacci SC, Carreño JM, Brody R, Moore A, King JC, Gomez JE, Rohs N, Rolfo C, Bunn PA Jr, Gerber DE, Minna JD, Krammer F, Ramalingam SS, García-Sastre A, Shyr Y, Ahmed R, Hirsch FR. Longitudinal nucleocapsid antibody testing reveals undocumented SARS-CoV-2 infections in patients with lung cancer. Cancer cell. 2023 Nov 13;41(11):1838-1840. Epub 2023 Oct 19. PMID: 37863065
  • Rathnasinghe R, Jangra S, Cupic A, Martínez-Romero C, Mulder LCF, Kehrer T, Yildiz S, Choi A, Mena I, De Vrieze J, Aslam S, Stadlbauer D, Meekins DA, McDowell CD, Balaraman V, Richt JA, De Geest BG, Miorin L, PVI study group, Krammer F, Simon V, García-Sastre A, Schotsaert M. The N501Y mutation in SARS-CoV-2 spike leads to morbidity in obese and aged mice and is neutralized by convalescent and post-vaccination human sera. medRxiv : the preprint server for health sciences. 2021 Jan 20. PMID: 33501468
  • Cai H, Chen Y, Feng Y, Asadi M, Kaufman L, Lee K, Kehrer T, Miorin L, Garcia-Sastre A, Gusella GL, Gu L, Ni Z, Mou S, He JC, Zhou W. SARS-CoV-2 viral protein ORF3A injures renal tubules by interacting with TRIM59 to induce STAT3 activation. Molecular therapy : the journal of the American Society of Gene Therapy. 2023 Mar 1;31(3):774-787. Epub 2022 Dec 15. PMID: 36523164
  • Stadlbauer D, Tan J, Jiang K, Hernandez MM, Fabre S, Amanat F, Teo C, Arunkumar GA, McMahon M, Capuano C, Twyman K, Jhang J, Nowak MD, Simon V, Sordillo EM, van Bakel H, Krammer F. Repeated cross-sectional sero-monitoring of SARS-CoV-2 in New York City. Nature. 2021 Feb;590(7844):146-150. Epub 2020 Nov 3. PMID: 33142304
  • Mack PC, Gomez JE, Rodilla AM, Carreño JM, Hsu CY, Rolfo C, Meshulami N, Moore A, Brody RI, King JC, Treatman J, Lee S, Raskin A, Srivastava K, Gleason CR, de Miguel-Perez D, PARIS/PSP study group, Tcheou J, Bielak D, Acharya R, Gerber DE, Rohs N, Henschke CI, Yankelevitz DF, Simon V, Minna JD, Bunn PA Jr, García-Sastre A, Krammer F, Shyr Y, Hirsch FR, Andre D, Alshammary H, van Bakel H, Bermúdez-González MC, Cai G, Cognigni C, Floda D, Firpo A, Kleiner G, Lyttle N, Mendez W, Mulder LCF, Oostenink A, Rooker A, Salimbangon A, Saksena M, Sominsky L, Sordillo EM. Longitudinal COVID-19-vaccination-induced antibody responses and Omicron neutralization in patients with lung cancer. Cancer cell. 2022 Jun 13;40(6):575-577. Epub 2022 Apr 20. PMID: 35504289
  • Kehrer T, Cupic A, Ye C, Yildiz S, Bouhhadou M, Crossland NA, Barrall E, Cohen P, Tseng A, Çağatay T, Rathnasinghe R, Flores D, Jangra S, Alam F, Mena N, Aslam S, Saqi A, Marin A, Rutkowska M, Ummadi MR, Pisanelli G, Richardson RB, Veit EC, Fabius JM, Soucheray M, Polacco BJ, Evans MJ, Swaney DL, Gonzalez-Reiche AS, Sordillo EM, van Bakel H, Simon V, Zuliani-Alvarez L, Fontoura BMA, Rosenberg BR, Krogan NJ, Martinez-Sobrido L, García-Sastre A, Miorin L. Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis. bioRxiv : the preprint server for biology. 2022 Nov 30. PMID: 36299428
  • Sindelar M, Stancliffe E, Schwaiger-Haber M, Anbukumar DS, Adkins-Travis K, Goss CW, O'Halloran JA, Mudd PA, Liu WC, Albrecht RA, García-Sastre A, Shriver LP, Patti GJ. Longitudinal metabolomics of human plasma reveals prognostic markers of COVID-19 disease severity. Cell reports. Medicine. 2021 Aug 17;2(8):100369. Epub 2021 Jul 21. PMID: 34308390
  • Escalera A, Gonzalez-Reiche AS, Aslam S, Mena I, Laporte M, Pearl RL, Fossati A, Rathnasinghe R, Alshammary H, van de Guchte A, Farrugia K, Qin Y, Bouhaddou M, Kehrer T, Zuliani-Alvarez L, Meekins DA, Balaraman V, McDowell C, Richt JA, Bajic G, Sordillo EM, Dejosez M, Zwaka TP, Krogan NJ, Simon V, Albrecht RA, van Bakel H, García-Sastre A, Aydillo T. Mutations in SARS-CoV-2 variants of concern link to increased spike cleavage and virus transmission. Cell host & microbe. 2022 Mar 9;30(3):373-387.e7. Epub 2022 Jan 21. PMID: 35150638
  • Krammer F. The role of vaccines in the COVID-19 pandemic: what have we learned? Seminars in immunopathology. 2024 Jan;45(4-6):451-468. Epub 2023 Jul 12. PMID: 37436465
  • Gao S, Esparza M, Dehghan I, Aksenova V, Zhang K, Batten K, Ferretti MB, Begg BE, Cagatay T, Shay JW, García-Sastre A, Goldsmith EJ, Chen ZJ, Dasso M, Lynch KW, Cobb MH, Fontoura BMA. Nuclear speckle integrity and function require TAO2 kinase. Proceedings of the National Academy of Sciences of the United States of America. 2022 Jun 21;119(25):e2206046119. Epub 2022 Jun 15. PMID: 35704758
  • Rathnasinghe R, Jangra S, Ye C, Cupic A, Singh G, Martínez-Romero C, Mulder LCF, Kehrer T, Yildiz S, Choi A, Yeung ST, Mena I, Gillespie V, De Vrieze J, Aslam S, Stadlbauer D, Meekins DA, McDowell CD, Balaraman V, Corley MJ, Richt JA, De Geest BG, Miorin L, PVI study group, Krammer F, Martinez-Sobrido L, Simon V, García-Sastre A, Schotsaert M, Kleiner G, Saksena M, Srivastava K, Gleason CR, Bermúdez-González MC, Beach KF, Russo KT, Sominsky LA, Ferreri ED, Chernet RL, Eaker LQ, Salimbangon AT, Jurczyszak D, Alshammary H, Mendez WA, Amoako AA, Fabre S, Awawda MH, Shin AS. Characterization of SARS-CoV-2 Spike mutations important for infection of mice and escape from human immune sera. Nature communications. 2022 Jul 7;13(1):3921. PMID: 35798721
  • Figueiredo JC, Hirsch FR, Kushi LH, Nembhard WN, Crawford JM, Mantis N, Finster L, Merin NM, Merchant A, Reckamp KL, Melmed GY, Braun J, McGovern D, Parekh S, Corley DA, Zohoori N, Amick BC, Du R, Gregersen PK, Diamond B, Taioli E, Sariol C, Espino A, Weiskopf D, Gifoni A, Brien J, Hanege W, Lipsitch M, Zidar DA, Scheck McAlearney A, Wajnberg A, LaBaer J, Yvonne Lewis E, Binder RA, Moormann AM, Forconi C, Forrester S, Batista J, Schieffelin J, Kim D, Biancon G, VanOudenhove J, Halene S, Fan R, Barouch DH, Alter G, Pinninti S, Boppana SB, Pati SK, Latting M, Karaba AH, Roback J, Sekaly R, Neish A, Brincks AM, Granger DA, Karger AB, Thyagarajan B, Thomas SN, Klein SL, Cox AL, Lucas T, Furr-Holden D, Key K, Jones N, Wrammerr J, Suthar M, Yu Wong S, Bowman NM, Simon V, Richardson LD, McBride R, Krammer F, Rana M, Kennedy J, Boehme K, Forrest C, Granger SW, Heaney CD, Knight Lapinski M, Wallet S, Baric RS, Schifanella L, Lopez M, Fernández S, Kenah E, Panchal AR, Britt WJ, Sanz I, Dhodapkar M, Ahmed R, Bartelt LA, Markmann AJ, Lin JT, Hagan RS, Wolfgang MC, Skarbinski J. Mission, Organization, and Future Direction of the Serological Sciences Network for COVID-19 (SeroNet) Epidemiologic Cohort Studies. Open forum infectious diseases. 2022 Apr 27;9(6):ofac171. doi: 10.1093/ofid/ofac171. eCollection 2022 Jun. PMID: 35765315
  • Bohan D, Van Ert H, Ruggio N, Rogers KJ, Badreddine M, Aguilar Briseño JA, Elliff JM, Rojas Chavez RA, Gao B, Stokowy T, Christakou E, Kursula P, Micklem D, Gausdal G, Haim H, Minna J, Lorens JB, Maury W. Phosphatidylserine receptors enhance SARS-CoV-2 infection. PLoS pathogens. 2021 Nov 19;17(11):e1009743. doi: 10.1371/journal.ppat.1009743. eCollection 2021 Nov. PMID: 34797899
  • Castaneda DC, Jangra S, Yurieva M, Martinek J, Callender M, Coxe M, Choi A, García-Bernalt Diego J, Lin J, Wu TC, Marches F, Chaussabel D, Yu P, Salner A, Aucello G, Koff J, Hudson B, Church SE, Gorman K, Anguiano E, García-Sastre A, Williams A, Schotsaert M, Palucka K. Spatiotemporally organized immunomodulatory response to SARS-CoV-2 virus in primary human broncho-alveolar epithelia. iScience. 2023 Jul 13;26(8):107374. doi: 10.1016/j.isci.2023.107374. eCollection 2023 Aug 18. PMID: 37520727
  • Bouhaddou M, Reuschl AK, Polacco BJ, Thorne LG, Ummadi MR, Ye C, Rosales R, Pelin A, Batra J, Jang GM, Xu J, Moen JM, Richards AL, Zhou Y, Harjai B, Stevenson E, Rojc A, Ragazzini R, Whelan MVX, Furnon W, De Lorenzo G, Cowton V, Syed AM, Ciling A, Deutsch N, Pirak D, Dowgier G, Mesner D, Turner JL, McGovern BL, Rodriguez ML, Leiva-Rebollo R, Dunham AS, Zhong X, Eckhardt M, Fossati A, Liotta NF, Kehrer T, Cupic A, Rutkowska M, Mena I, Aslam S, Hoffert A, Foussard H, Olwal CO, Huang W, Zwaka T, Pham J, Lyons M, Donohue L, Griffin A, Nugent R, Holden K, Deans R, Aviles P, Lopez-Martin JA, Jimeno JM, Obernier K, Fabius JM, Soucheray M, Hüttenhain R, Jungreis I, Kellis M, Echeverria I, Verba K, Bonfanti P, Beltrao P, Sharan R, Doudna JA, Martinez-Sobrido L, Patel AH, Palmarini M, Miorin L, White K, Swaney DL, Garcia-Sastre A, Jolly C, Zuliani-Alvarez L, Towers GJ, Krogan NJ. SARS-CoV-2 variants evolve convergent strategies to remodel the host response. Cell. 2023 Oct 12;186(21):4597-4614.e26. Epub 2023 Sep 21. PMID: 37738970
  • Bohan D, Ert HV, Ruggio N, Rogers KJ, Badreddine M, Aguilar Briseño JA, Rojas Chavez RA, Gao B, Stokowy T, Christakou E, Micklem D, Gausdal G, Haim H, Minna J, Lorens JB, Maury W. Phosphatidylserine Receptors Enhance SARS-CoV-2 Infection: AXL as a Therapeutic Target for COVID-19. bioRxiv : the preprint server for biology. 2021 Jun 24. PMID: 34159331
  • Kehrer T, Cupic A, Ye C, Yildiz S, Bouhaddou M, Crossland NA, Barrall EA, Cohen P, Tseng A, Çağatay T, Rathnasinghe R, Flores D, Jangra S, Alam F, Mena I, Aslam S, Saqi A, Rutkowska M, Ummadi MR, Pisanelli G, Richardson RB, Veit EC, Fabius JM, Soucheray M, Polacco BJ, Ak B, Marin A, Evans MJ, Swaney DL, Gonzalez-Reiche AS, Sordillo EM, van Bakel H, Simon V, Zuliani-Alvarez L, Fontoura BMA, Rosenberg BR, Krogan NJ, Martinez-Sobrido L, García-Sastre A, Miorin L. Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis. Cell host & microbe. 2023 Oct 11;31(10):1668-1684.e12. Epub 2023 Sep 21. PMID: 37738983
  • Makio T, Zhang K, Love N, Mast FD, Liu X, Elaish M, Hobman T, Aitchison JD, Fontoura BMA, Wozniak RW. SARS-CoV-2 Orf6 is positioned in the nuclear pore complex by Rae1 to inhibit nucleocytoplasmic transport. Molecular biology of the cell. 2024 May 1;35(5):ar62. Epub 2024 Mar 20. PMID: 38507240
  • Mack PC, Hsu CY, Rodilla AM, Gomez JE, Cagan J, Huang Y, Tavolacci S, Valanparambil RM, Rohs N, Brody R, Nichols B, Carreño JM, Bhalla S, Rolfo C, Gerber DE, Moore A, King JC, Ahmed R, Minna JD, Bunn PA Jr, García-Sastre A, Krammer F, Hirsch FR, Shyr Y. Time-Dependent Effects of Clinical Interventions on SARS-CoV-2 Immunity in Patients with Lung Cancer. Vaccines. 2024 Jun 26;12. (7). PMID: 39066351
  • Castaneda DC, Jangra S, Yurieva M, Martinek J, Callender M, Coxe M, Choi A, García-Bernalt Diego J, Wu TC, Marches F, Chaussabel D, García-Sastre A, Schotsaert M, Williams A, Palucka K. Protocol for establishing primary human lung organoid-derived air-liquid interface cultures from cryopreserved human lung tissue. STAR protocols. 2023 Dec 15;4(4):102735. Epub 2023 Nov 21. PMID: 37991921
  • Krammer F, Schultz-Cherry S. We need to keep an eye on avian influenza. Nature reviews. Immunology. 2023 May;23(5):267-268. PMID: 36944755
  • Mack PC, Hirsch FR, Bunn PA, Minna JD. Longitudinal Analyses of COVID-19 Vaccination in Patients With Lung Cancer: Antibody Responses and Variant-Specific Neutralization. Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2022 Nov 20;40(33):3787-3789. Epub 2022 Jun 27. PMID: 35759731
  • Sindelar M, Stancliffe E, Schwaiger-Haber M, Anbukumar DS, Albrecht RA, Liu WC, Travis KA, García-Sastre A, Shriver LP, Patti GJ. Longitudinal Metabolomics of Human Plasma Reveals Robust Prognostic Markers of COVID-19 Disease Severity. medRxiv : the preprint server for health sciences. 2021 Feb 8. PMID: 33564793
  • Reuschl AK, Thorne LG, Zuliani-Alvarez L, Bouhaddou M, Obernier K, Hiatt J, Soucheray M, Turner J, Fabius JM, Nguyen GT, Swaney DL, Rosales R, White KM, Avilés P, Kirby IT, Melnyk JE, Shi Y, Zhang Z, Shokat KM, García-Sastre A, Jolly C, Towers GJ, Krogan NJ. Host-directed therapies against early-lineage SARS-CoV-2 retain efficacy against B.1.1.7 variant. bioRxiv : the preprint server for biology. 2021 Feb 4. PMID: 33501437
  • Jangra S, Ye C, Rathnasinghe R, Stadlbauer D, PVI study group, Krammer F, Simon V, Martinez-Sobrido L, García-Sastre A, Schotsaert M. The E484K mutation in the SARS-CoV-2 spike protein reduces but does not abolish neutralizing activity of human convalescent and post-vaccination sera. medRxiv : the preprint server for health sciences. 2021 Jan 29. PMID: 33532796
  • Mei M, Cupic A, Miorin L, Ye C, Cagatay T, Zhang K, Patel K, Wilson N, McDonald WH, Crossland NA, Lo M, Rutkowska M, Aslam S, Mena I, Martinez-Sobrido L, Ren Y, García-Sastre A, Fontoura BMA. Inhibition of mRNA nuclear export promotes SARS-CoV-2 pathogenesis. Proceedings of the National Academy of Sciences of the United States of America. 2024 May 28;121(22):e2314166121. Epub 2024 May 20. PMID: 38768348
  • Jangra S, Ye C, Rathnasinghe R, Stadlbauer D, Personalized Virology Initiative study group, Krammer F, Simon V, Martinez-Sobrido L, García-Sastre A, Schotsaert M, Alshammary H, Amoako AA, Awawda MH, Beach KF, Bermúdez-González MC, Chernet RL, Eaker LQ, Ferreri ED, Floda DL, Gleason CR, Kleiner G, Jurczyszak D, Matthews JC, Mendez WA, Mulder LCF, Russo KT, Salimbangon AT, Saksena M, Shin AS, Sominsky LA, Srivastava K. SARS-CoV-2 spike E484K mutation reduces antibody neutralisation. The Lancet. Microbe. 2021 Jul;2(7):e283-e284. Epub 2021 Apr 7. PMID: 33846703