Principal Investigator

Kord Michael
Kober
Awardee Organization

University Of California, San Francisco
United States

Fiscal Year
2024
Activity Code
R37
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

An Investigation of the Molecular Mechanisms for and Prediction of the Severity of Cancer Chemotherapy-Related Fatigue Using a Multi-staged Integrated Omics Approach

Cancer-related fatigue (CRF) is the most common symptom associated with cancer and its treatments. Moderate to severe CRF has a negative impact on patients' ability to tolerate treatments as well as on their quality of life. In some patients, CRF is so severe, that they discontinue cancer treatment. Given its high occurrence and significant negative impact, it is imperative that effective treatments be developed for this devastating symptom. Two of the major knowledge gaps for CRF are a lack of a risk prediction model and a lack of knowledge of its underlying mechanisms. A sensitive and specific risk prediction model would assist clinicians to determine which patients are most likely to experience high levels of CRF and provide recommendations regarding activity modifying interventions (e.g., exercise). Increased knowledge of the mechanisms for CRF could identify potential targets for therapeutic interventions. Both of these knowledge gaps will be addressed in this application. Prior studies suggest that patients will experience an increase in the severity of CRF in the weeks following concurrent chemotherapy and radiation therapy (CCRT) that can persist after completion of treatment. However, no models exist to predict the magnitude of this increase. This inability to predict the severity of CRF during and following CCRT limits the ability of clinicians to identify high-risk patients and provide them with recommendations to manage CRF. To address this knowledge gap, demographic, clinical, and molecular data that are collected prior to the initiation of CCRT will be used to evaluate the utility of these features to predict the severity of CRF midway through, at the completion of, and six months following the completion of CCRT. In terms of mechanisms of CRF, while previous studies provide some insights into potential mechanisms that underlie CRF, several limitations warrant consideration, including: poorly defined CRF phenotype; relatively small sample sizes; evaluation of patients receiving only CTX or only RT; evaluation of a single type of molecular data; and evaluation of only cross-sectional molecular data. To address these limitations, we propose to evaluate for associations between changes in CRF and changes in gene expression and circulating cytokines in patients receiving CCRT over two time points (i.e., prior to and at the completion of treatment). This study will provide new insights to be able to identify high-risk patients as well as identify potential therapeutic targets. This project will guide the development of clinical studies to investigate additional mechanisms and therapeutic interventions for CRF and other types of fatigue associated with cancer and its treatment (e.g., immunotherapy, surgery).

Publications

  • Kober KM, Yom SS. Doc, I feel tired… oh really, so how's your mucositis? Cancer. 2021 Sep 15;127(18):3294-3297. Epub 2021 May 24. PMID: 34028000
  • Harris CS, Miaskowski CA, Conley YP, Hammer MJ, Dhruva AA, Levine JD, Olshen AB, Kober KM. Gastrointestinal Symptom Cluster is Associated With Epigenetic Regulation of Lymphotoxin Beta in Oncology Patients Receiving Chemotherapy. Biological research for nursing. 2023 Jan;25(1):51-64. Epub 2022 Aug 5. PMID: 35929442
  • Oppegaard KR, Mayo SJ, Armstrong TS, Dokiparthi V, Melisko M, Levine JD, Olshen AB, Anguera JA, Roy R, Paul S, Cooper B, Conley YP, Hammer MJ, Miaskowski C, Kober KM. Neurodegenerative disease pathways are perturbed in patients with cancer who self-report cognitive changes and anxiety: A pathway impact analysis. Cancer. 2024 Apr 27. Epub 2024 Apr 27. PMID: 38676932
  • Kober KM, Roy R, Dhruva A, Conley YP, Chan RJ, Cooper B, Olshen A, Miaskowski C. Prediction of evening fatigue severity in outpatients receiving chemotherapy: less may be more. Fatigue : biomedicine, health & behavior. 2021;9(1):14-32. Epub 2021 Feb 16. PMID: 34249477
  • Kober KM, Harris C, Conley YP, Dhruva A, Dokiparthi V, Hammer MJ, Levine JD, Oppegaard K, Paul S, Shin J, Sucher A, Wright F, Yuen B, Olshen AB, Miaskowski C. Perturbations in common and distinct inflammatory pathways associated with morning and evening fatigue in outpatients receiving chemotherapy. Cancer medicine. 2023 Mar;12(6):7369-7380. Epub 2022 Nov 14. PMID: 36373573
  • Harris CS, Miaskowski CA, Dhruva AA, Cataldo J, Kober KM. Multi-Staged Data-Integrated Multi-Omics Analysis for Symptom Science Research. Biological research for nursing. 2021 Oct;23(4):596-607. Epub 2021 Apr 8. PMID: 33827270
  • Harris CS, Miaskowski CA, Conley YP, Hammer MJ, Dunn LB, Dhruva AA, Levine JD, Olshen AB, Kober KM. Epigenetic Regulation of Inflammatory Mechanisms and a Psychological Symptom Cluster in Patients Receiving Chemotherapy. Nursing research. 2023 May-Jun 1;72(3):200-210. Epub 2023 Mar 17. PMID: 36929768
  • Kober KM, Berger L, Roy R, Olshen A. Torch-eCpG: A fast and scalable eQTM mapper for thousands of molecular phenotypes with graphical processing units. bioRxiv : the preprint server for biology. 2023 Mar 10. PMID: 36945384
  • Wright F, Cooper BA, Paul SM, Hammer MJ, Conley YP, Levine JD, Miaskowski C, Kober KM. Distinct Profiles of Morning and Evening Fatigue Co-Occurrence in Patients During Chemotherapy. Nursing research. 2023 Jul-Aug 1;72(4):259-271. Epub 2023 Apr 18. PMID: 37084242
  • Kober KM, Berger L, Roy R, Olshen A. Torch-eCpG: a fast and scalable eQTM mapper for thousands of molecular phenotypes with graphical processing units. BMC bioinformatics. 2024 Feb 14;25(1):71. PMID: 38355413
  • Calvo-Schimmel A, Kober KM, Paul SM, Cooper BA, Harris C, Shin J, Hammer MJ, Conley YP, Dokiparthi V, Olshen A, Levine JD, Miaskowski C. Sleep disturbance is associated with perturbations in immune-inflammatory pathways in oncology outpatients undergoing chemotherapy. Sleep medicine. 2023 Jan;101:305-315. Epub 2022 Nov 21. PMID: 36470166
  • Mortlock S, Houshdaran S, Kosti I, Rahmioglu N, Nezhat C, Vitonis AF, Andrews SV, Grosjean P, Paranjpe M, Horne AW, Jacoby A, Lager J, Opoku-Anane J, Vo KC, Manvelyan E, Sen S, Ghukasyan Z, Collins F, Santamaria X, Saunders P, Kober K, McRae AF, Terry KL, Vallvé-Juanico J, Becker C, Rogers PAW, Irwin JC, Zondervan K, Montgomery GW, Missmer S, Sirota M, Giudice L. Global endometrial DNA methylation analysis reveals insights into mQTL regulation and associated endometriosis disease risk and endometrial function. Communications biology. 2023 Aug 16;6(1):780. PMID: 37587191
  • Harris CS, Pozzar RA, Conley Y, Eicher M, Hammer MJ, Kober KM, Miaskowski C, Colomer-Lahiguera S. Big Data in Oncology Nursing Research: State of the Science. Seminars in oncology nursing. 2023 Jun;39(3):151428. Epub 2023 Apr 19. PMID: 37085404