Program Official

Principal Investigator

Mokenge P.
Malafa
Awardee Organization

H. Lee Moffitt Cancer Ctr & Res Inst
United States

Fiscal Year
2024
Activity Code
R01
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

Novel Therapy to Inhibit IPMN Progression

Despite advances in therapeutic strategies, pancreatic ductal adenocarcinoma (PDAC) remains one of the deadliest malignancies. An opportunity exists to impact mortality from PDAC by preventing the development of the disease through preventing progression of one of its most important precursors, intraductal papillary mucinous neoplasm (IPMN). IPMN is a significant health problem with a high prevalence with an estimate of 6% of MRI studies obtained for other indications demonstrating IPMN(s). Although most IPMNs are quiescent, they represent a source of great anxiety for patients because of the fear of developing PDAC. Since 30% of PDACs arise from IPMNs, these lesions also represent an opportunity to intercept the development of PDAC. Therefore, is an unmet need to develop biomarkers that predict IPMN progression and strategies to intercept IPMN progression to PDAC. We have made substantial progress in developing strategies to intercept IPMN progression as illustrated in the parent grant of this supplement application which is translating discoveries from our laboratory regarding the role of a micronutrient (delta-tocotrienol (DT3)) in preventing IPMN progression in a Phase 2 prospective randomized double-blind placebo-controlled trial. Emerging studies suggest that the IPMN Tumor Immune Microenvironment (TIME) may play a critical role in a crosstalk with pancreatic ductal epithelial cells in promoting the progression of IPMN to PDAC. However, the role of specific immune cells and the underlying mechanisms driving TIME mediated IPMN progression is poorly understood. To address this knowledge gap, we propose to test the central hypothesis that crosstalk between specific immune cells and pancreatic ductal cells influence the switch from quiescent (low-grade) IPMN to aggressive (highgrade) IPMN leading to invasive PDAC. Using a combination of human patient samples and genetically engineered mouse models, as well as in vivo, in vitro, and in silico approaches, we propose to map immune cell populations and functional status around normal pancreatic duct, low-grade IPMN, high-grade IPMN, and invasive PDAC in humans (Aim 1); and define the function of immune cells at different stages of carcinogenesis in human and mouse (Aim 2). The supplement will allow Mrs. Krystal Villalobos-Ayala to receive further training in conducting basic and translational research. Her results will assist in defining the role of TIME in PDAC evolution ultimately contributing to further insights into novel immunological strategies to intercept IPMN progression to PDAC.

Publications

  • Powers BD, Allenson K, Perone JA, Thompson Z, Boulware D, Denbo JW, Kim JK, Permuth JB, Pimiento J, Hodul PJ, Malafa MP, Kim DW, Fleming JB, Anaya DA. The impact of age and comorbidity on localized pancreatic cancer outcomes: A US retrospective cohort analysis with implications for surgical centralization. Surgery open science. 2023 Feb 11;12:14-21. doi: 10.1016/j.sopen.2023.02.001. eCollection 2023 Mar. PMID: 36879667
  • Nasir A, Ahmed MK, Saller JJ, Henderson-Jackson EB, Malafa MP, Yeatman TJ, Coppola D. p21 Protein Outperforms Clinico-pathological Criteria in Predicting Liver Metastases in Pancreatic Endocrine Tumors. Cancer genomics & proteomics. 2023 Nov-Dec;20(6):522-530. PMID: 37889062
  • Bryant JM, Palm RF, Herrera R, Rubens M, Hoffe SE, Kim DW, Kaiser A, Ucar A, Fleming J, De Zarraga F, Hodul P, Aparo S, Asbun H, Malafa M, Jimenez R, Denbo J, Frakes JM, Chuong MD. Multi-Institutional Outcomes of Patients Aged 75 years and Older With Pancreatic Ductal Adenocarcinoma Treated With 5-Fraction Ablative Stereotactic Magnetic Resonance Image-Guided Adaptive Radiation Therapy (A-SMART). Cancer control : journal of the Moffitt Cancer Center. 2023 Jan-Dec;30:10732748221150228. PMID: 36598464
  • Nimmakayala RK, Ogunleye AO, Parte S, Krishna Kumar N, Raut P, Varadharaj V, Perumal NK, Nallasamy P, Rauth S, Cox JL, Lele SM, Batra SK, Ponnusamy MP. PAF1 cooperates with YAP1 in metaplastic ducts to promote pancreatic cancer. Cell death & disease. 2022 Oct 1;13(10):839. PMID: 36180487
  • Li X, Gulati M, Larson AC, Solheim JC, Jain M, Kumar S, Batra SK. Immune checkpoint blockade in pancreatic cancer: Trudging through the immune desert. Seminars in cancer biology. 2022 Nov;86(Pt 2):14-27. Epub 2022 Aug 27. PMID: 36041672
  • Park MA, Zaw T, Yoder SJ, Gomez M, Genilo-Delgado M, Basinski T, Katende E, Dam A, Mok SRS, Monteiro A, Mohammadi A, Jeong DK, Jiang K, Centeno BA, Hodul P, Malafa M, Fleming J, Chen DT, Mo Q, Teer JK, Permuth JB. A pilot study to evaluate tissue- and plasma-based DNA driver mutations in a cohort of patients with pancreatic intraductal papillary mucinous neoplasms. G3 (Bethesda, Md.). 2023 Feb 9;13. (2). PMID: 36454217
  • Pothuraju R, Khan I, Jain M, Bouvet M, Malafa M, Roy HK, Kumar S, Batra SK. Colorectal cancer murine models: Initiation to metastasis. Cancer letters. 2024 Apr 10;587:216704. Epub 2024 Feb 14. PMID: 38360138
  • Raut P, Nimmakayala RK, Batra SK, Ponnusamy MP. Clinical and Molecular Attributes and Evaluation of Pancreatic Cystic Neoplasm. Biochimica et biophysica acta. Reviews on cancer. 2023 Jan;1878(1):188851. Epub 2022 Dec 16. PMID: 36535512
  • Miao R, Kim DW, Yu J, Malafa M, Mehta R, Strosberg J, Imanirad I, Iyer S, Uhlik M, Benjamin L, Kim R. RNA Expression-Based Analysis to Predict Response in Patients with Metastatic Mismatch Repair Proficient Colorectal Cancer Treated with Regorafenib and Nivolumab. Oncology. 2024;102(7):549-555. Epub 2023 Dec 7. PMID: 38061339
  • Ogunleye AO, Nimmakayala RK, Batra SK, Ponnusamy MP. Metabolic Rewiring and Stemness: A Critical Attribute of Pancreatic Cancer Progression. Stem cells (Dayton, Ohio). 2023 May 15;41(5):417-430. PMID: 36869789
  • Gardiner A, Kidd J, Elias MC, Young K, Mabey B, Taherian N, Cummings S, Malafa M, Rosenthal E, Permuth JB. Pancreatic Ductal Carcinoma Risk Associated With Hereditary Cancer-Risk Genes. Journal of the National Cancer Institute. 2022 Jul 11;114(7):996-1002. PMID: 35445726
  • Parte S, Kaur AB, Nimmakayala RK, Ogunleye AO, Chirravuri R, Vengoji R, Leon F, Nallasamy P, Rauth S, Alsafwani ZW, Lele S, Cox JL, Bhat I, Singh S, Batra SK, Ponnusamy MP. Cancer-Associated Fibroblast Induces Acinar-to-Ductal Cell Transdifferentiation and Pancreatic Cancer Initiation Via LAMA5/ITGA4 Axis. Gastroenterology. 2024 May;166(5):842-858.e5. Epub 2023 Dec 27. PMID: 38154529
  • Jeong D, Morse B, Polk SL, Chen DT, Li J, Hodul P, Centeno BA, Costello J, Jiang K, Machado S, El Naqa I, Farah PT, Huynh T, Raghunand N, Mok S, Dam A, Malafa M, Qayyum A, Fleming JB, Permuth JB. Pancreatic Cyst Size Measurement on Magnetic Resonance Imaging Compared to Pathology. Cancers. 2024 Jan 1;16. (1). PMID: 38201633
  • Bryant JM, Palm RF, Liveringhouse C, Boyer E, Hodul P, Malafa M, Denbo J, Kim D, Carballido E, Fleming JB, Hoffe S, Frakes J. Surgical and Pathologic Outcomes of Pancreatic Adenocarcinoma (PA) After Preoperative Ablative Stereotactic Magnetic Resonance Image Guided Adaptive Radiation Therapy (A-SMART). Advances in radiation oncology. 2022 Aug 6;7(6):101045. doi: 10.1016/j.adro.2022.101045. eCollection 2022 Nov-Dec. PMID: 36420193
  • Kisling SG, Atri P, Shah A, Cox JL, Sharma S, Smith LM, Ghersi D, Batra SK. A Novel HOXA10-Associated 5-Gene-Based Prognostic Signature for Stratification of Short-term Survivors of Pancreatic Ductal Adenocarcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research. 2023 Sep 15;29(18):3759-3770. PMID: 37432996
  • Kehrberg RJ, Bhyravbhatla N, Batra SK, Kumar S. Epigenetic regulation of cancer-associated fibroblast heterogeneity. Biochimica et biophysica acta. Reviews on cancer. 2023 May;1878(3):188901. Epub 2023 Apr 28. PMID: 37120098
  • Palm RF, Boyer E, Kim DW, Denbo J, Hodul PJ, Malafa M, Fleming JB, Shridhar R, Chuong MD, Mellon EA, Frakes JM, Hoffe SE. Neoadjuvant chemotherapy and stereotactic body radiation therapy for borderline resectable pancreas adenocarcinoma: influence of vascular margin status and type of chemotherapy. HPB : the official journal of the International Hepato Pancreato Biliary Association. 2023 Sep;25(9):1110-1120. Epub 2023 May 4. PMID: 37286392
  • Mehta R, Frakes J, Kim J, Nixon A, Liu Y, Howard L, Martinez Jimenez ME, Carballido E, Imanirad I, Sanchez J, Dessureault S, Xie H, Felder S, Sahin I, Hoffe S, Malafa M, Kim R. Phase I Study of Lenvatinib and Capecitabine with External Radiation Therapy in Locally Advanced Rectal Adenocarcinoma. The oncologist. 2022 Aug 5;27(8):621-e617. PMID: 35325225
  • Ogunleye AO, Gayen N, Rauth S, Marimuthu S, Nimmakayala RK, Alsafwani ZW, Cox JL, Batra SK, Ponnusamy MP. PAF1/HIF1α axis rewires the glycolytic metabolism to fuel aggressiveness of pancreatic cancer. Cancer & metabolism. 2024 Sep 6;12(1):26. PMID: 39242538
  • Nallasamy P, Nimmakayala RK, Parte S, Are AC, Batra SK, Ponnusamy MP. Tumor microenvironment enriches the stemness features: the architectural event of therapy resistance and metastasis. Molecular cancer. 2022 Dec 22;21(1):225. PMID: 36550571
  • Uhlik M, Pointing D, Iyer S, Ausec L, Štajdohar M, Cvitkovič R, Žganec M, Culm K, Santos VC, Pytowski B, Malafa M, Liu H, Krieg AM, Lee J, Rosengarten R, Benjamin L. Xerna™ TME Panel is a machine learning-based transcriptomic biomarker designed to predict therapeutic response in multiple cancers. Frontiers in oncology. 2023 May 12;13:1158345. doi: 10.3389/fonc.2023.1158345. eCollection 2023. PMID: 37251949
  • Shah A, Chaudhary S, Lakshmanan I, Aithal A, Kisling SG, Sorrell C, Marimuthu S, Gautam SK, Rauth S, Kshirsagar P, Cox JL, Natarajan G, Bhatia R, Mallya K, Rachagani S, Nasser MW, Ganti AK, Salgia R, Kumar S, Jain M, Ponnusamy MP, Batra SK. Chimeric antibody targeting unique epitope on onco-mucin16 reduces tumor burden in pancreatic and lung malignancies. NPJ precision oncology. 2023 Aug 11;7(1):74. PMID: 37567918
  • Rauth S, Ganguly K, Atri P, Parte S, Nimmakayala RK, Varadharaj V, Nallasamy P, Vengoji R, Ogunleye AO, Lakshmanan I, Chirravuri R, Bessho M, Cox JL, Foster JM, Talmon GA, Bessho T, Ganti AK, Batra SK, Ponnusamy MP. Elevated PAF1-RAD52 axis confers chemoresistance to human cancers. Cell reports. 2023 Feb 28;42(2):112043. Epub 2023 Jan 28. PMID: 36709426
  • Kim DW, Beato F, Kim Y, Tassielli AF, Dai R, Denbo JW, Hodul PJ, Malafa MP, Fleming JB. Real time ex vivo chemosensitivity assay for pancreatic adenocarcinoma. Oncotarget. 2023 Sep 15;14:811-818. PMID: 37713330
  • Zhang C, Atri P, Nallasamy P, Parte S, Rauth S, Nimmakayala RK, Marimuthu S, Chirravuri-Venkata R, Bhatia R, Halder S, Shah A, Cox JL, Smith L, Kumar S, Foster JM, Kukreja RC, Seshacharyulu P, Ponnusamy MP, Batra SK. Small molecule inhibitor against onco-mucins disrupts Src/FosL1 axis to enhance gemcitabine efficacy in pancreatic ductal adenocarcinoma. Cancer letters. 2022 Dec 28;551:215922. Epub 2022 Sep 19. PMID: 36285687
  • Lakshmanan I, Marimuthu S, Chaudhary S, Seshacharyulu P, Rachagani S, Muniyan S, Chirravuri-Venkata R, Atri P, Rauth S, Nimmakayala RK, Siddiqui JA, Gautam SK, Shah A, Natarajan G, Parte S, Bhyravbhatla N, Mallya K, Haridas D, Talmon GA, Smith LM, Kumar S, Ganti AK, Jain M, Ponnusamy MP, Batra SK. Muc16 depletion diminishes KRAS-induced tumorigenesis and metastasis by altering tumor microenvironment factors in pancreatic ductal adenocarcinoma. Oncogene. 2022 Nov;41(48):5147-5159. Epub 2022 Oct 21. PMID: 36271032
  • Permuth JB, Mesa T, Williams SL, Cardentey Y, Zhang D, Pawlak EA, Li J, Cameron ME, Ali KN, Jeong D, Yoder SJ, Chen DT, Trevino JG, Merchant N, Malafa M. A pilot study to troubleshoot quality control metrics when assessing circulating miRNA expression data reproducibility across study sites. Cancer biomarkers : section A of Disease markers. 2022;33(4):467-478. PMID: 35491771
  • Bhatia R, Siddiqui JA, Ganguly K, Thompson CM, Cannon A, Aithal A, Perumal N, Maurya SK, Li X, Cox JL, Gurumurthy CB, Rachagani S, Jain M, Nasser MW, Batra SK, Kumar S. Muc4 loss mitigates epidermal growth factor receptor activity essential for PDAC tumorigenesis. Oncogene. 2023 Mar;42(10):759-770. Epub 2023 Jan 9. PMID: 36624189
  • Powers BD, McDonald J, Mhaskar R, Lee SJC, Permuth JB, Vadaparampil S, Gilbert SM, Denbo JW, Kim DW, Pimiento JM, Hodul PJ, Malafa MP, Anaya DA, Fleming JB. Hospital Surgical Volume Is Poorly Correlated With Delivery of Multimodal Treatment for Localized Pancreatic Cancer: A National Retrospective Cohort Study. Annals of surgery open : perspectives of surgical history, education, and clinical approaches. 2022 Aug 17;3(3):e197. doi: 10.1097/AS9.0000000000000197. eCollection 2022 Sep. PMID: 36199487

Clinical Trials

Study Name Clinical Trial ID
Study of IPMN Progression Prevention With Tocotrienol (SIPP-T3) NCT06519097