Program Official

Principal Investigator

Hemant K.
Roy
Awardee Organization

Baylor College Of Medicine
United States

Fiscal Year
2017
Activity Code
R33
Project End Date

Area B: Minimally Intrusive Colorectal Cancer Risk Stratification with Nanocytology:Targeting Underscreened Populations

Colorectal cancer (CRC) remains the second leading cause of cancer deaths among Americans underscoring the need for more effective screening practices. Colonoscopy as primary screening has been accompanied by a modest but steady decline in CRC incidence through identification and removal of precursor lesions, the adenomatous polyp. Indeed, there has been a 32% decline between years 2000-2013 in CRC incidence in patients over age 50 (thus eligible for screening). Strikingly, during this same time period, the incidence rate for those under 50 has increased by 22%. Thus, new and effective screening strategies are urgently needed to address the rising burden of CRC (≤50 years) which is expected to increase over the next decade with the rising young population. The objective of the R33 Moonshot Project is to develop a highly advanced screening approach to identify the subset of young patients who actually harbor advanced adenomas and could benefit from colonoscopy via a test that is sensitive to advanced adenomas, low-cost, and that can be carried out in a primary care setting. To this end, we have developed a new technology, partial wave spectroscopic (PWS) microscopy or nanocytology. Nanocytology performed on colonocytes swabbed from the rectal mucosa is able to identify nanoscale alterations in higher order chromatin structure, which are highly accurate markers of the presence of advanced adenomas that might be located anywhere in the colon. The goal for the proposed project is to finalize the PWS technology, turn it into a practical, accurate, and low-cost test that is viable for young population screening, and conduct a pre-definitive clinical trial. We aim to achieve sensitivity and specificity over 90%. Upon the completion of this moonshot project, nanocytology will be ready for a definitive clinical trial, which can lead to CLIA approval and launch in clinical practice as a laboratory-developed test (LDT).

Publications

  • Bugter O, Li Y, Wolters AHG, Agrawal V, Dravid A, Chang A, Hardillo J, Giepmans BNG, Baatenburg de Jong RJ, Amelink A, Backman V, Robinson DJ. Early Upper Aerodigestive Tract Cancer Detection Using Electron Microscopy to Reveal Chromatin Packing Alterations in Buccal Mucosa Cells. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 2021 Aug;27(4):878-888. PMID: 34108070
  • Gladstein S, Almassalha LM, Cherkezyan L, Chandler JE, Eshein A, Eid A, Zhang D, Wu W, Bauer GM, Stephens AD, Morochnik S, Subramanian H, Marko JF, Ameer GA, Szleifer I, Backman V. Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm. Nature communications. 2019 Apr 10;10(1):1652. PMID: 30971691
  • Kalman RS, Stawarz A, Nunes D, Zhang D, Dela Cruz MA, Mohanty A, Subramanian H, Backman V, Roy HK. Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study. PloS one. 2018 May 17;13(5):e0197427. doi: 10.1371/journal.pone.0197427. eCollection 2018. PMID: 29771950
  • Bhardwaj V, Dela Cruz M, Subramanyam D, Kumar R, Markan S, Parker B, Roy HK. Exercise-induced myokines downregulates the ACE2 level in bronchial epithelial cells: Implications for SARS-CoV-2 prevention. PloS one. 2022 Jul 20;17(7):e0271303. doi: 10.1371/journal.pone.0271303. eCollection 2022. PMID: 35857747
  • Wang X, Frederick J, Wang H, Hui S, Backman V, Ji Z. Spike-in normalization for single-cell RNA-seq reveals dynamic global transcriptional activity mediating anticancer drug response. NAR genomics and bioinformatics. 2021 Jun 17;3(2):lqab054. doi: 10.1093/nargab/lqab054. eCollection 2021 Jun. PMID: 34159316
  • Roy P, Chowdhury S, Roy HK. Exercise-induced myokines as emerging therapeutic agents in colorectal cancer prevention and treatment. Future oncology (London, England). 2018 Feb;14(4):309-312. Epub 2018 Jan 10. PMID: 29318900
  • Mohanty A, Eshein A, Kamineni P, Avissar U, Bliss CM, Long MT, Lowe RC, Moore TC, Nunes DP, Backman V, Roy HK. Quantification of gastric mucosal microcirculation as a surrogate marker of portal hypertension by spatially resolved subdiffuse reflectance spectroscopy in diagnosis of cirrhosis: a proof-of-concept study. Gastrointestinal endoscopy. 2021 Jul;94(1):60-67.e1. Epub 2020 Dec 30. PMID: 33385462
  • Datta S, Sherva RM, De La Cruz M, Long MT, Roy P, Backman V, Chowdhury S, Roy HK. Single Nucleotide Polymorphism Facilitated Down-Regulation of the Cohesin Stromal Antigen-1: Implications for Colorectal Cancer Racial Disparities. Neoplasia (New York, N.Y.). 2018 Mar;20(3):289-294. Epub 2018 Feb 19. PMID: 29471289
  • Kalman RS, Stawarz A, Nunes D, Zhang D, Dela Cruz MA, Mohanty A, Subramanian H, Backman V, Roy HK. Correction: Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study. PloS one. 2018 Jul 24;13(7):e0201500. doi: 10.1371/journal.pone.0201500. eCollection 2018. PMID: 30040862