Principal Investigator

Anna E
Lokshin
Awardee Organization

University Of Pittsburgh At Pittsburgh
United States

Fiscal Year
2024
Activity Code
R01
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

Urine and serum biomarkers for early diagnosis and risk assessment of pancreatic cancer

Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal cancers, primarily due to most cases being diagnosed at an advanced, incurable stage. While 5-year survival of metastatic PDAC is <5%, outcomes dramatically improve for localized PDAC. Poor prognosis is due to a lack of biomarkers for diagnosing PDAC at an early, asymptomatic stage when cure is possible. Effective diagnosis of early stage PDAC depends on identification of accurate, non-invasive biomarkers in combination with a strategy for screening increased risk populations. Our primary objective is to identify non-invasive protein biomarkers in serum, urine, and exosomes that accurately distinguish between patients with and without early stage resectable PDAC that is amenable to curative surgery. Novel diagnostics would also improve discrimination between PDAC and benign pancreatic pathologies. The goal of the proposed research is to develop clinically translatable noninvasive biomarkersbased tests for screening (in high risk groups) and differential diagnosis of PDAC. Our central hypothesis is that combinations of urinary, serum, and exosome derived biomarkers could be synergistic offering a superior classification power. We have used urine and serum samples from retrospective and prospective cohort studies to identify a range of strong candidate combinatorial multimarker algorithms for early detection and diagnosis of PDAC. In Aim 1, we will optimize the performance of a PDAC differential diagnosis algorithm and will validate the optimized algorithm in samples collected prior to clinical diagnosis in the Pancreatic Adenocarcinoma Gene Environment Risk (PAGER) study. In Aim 2, we will optimize the performance of an early detection algorithm for resectable PDAC in pre-diagnostic samples from three prospectively collected cohorts and validate the optimized EDA in blinded parallel serum/urine samples from the Southern Community Cohort Study (SCCS). If successful, our project will yield novel, validated algorithms for risk assessment and early detection and for differential diagnosis of PDAC. These algorithms when combined will result in a new pioneering screening paradigm for PDAC allowing for timely live-saving interventions. Our strong preliminary data, powerful and synergistic investigative team, and the availability of parallel urine and serum samples from unique prospective cohorts contribute to the high probability of successful accomplishing the proposed studies.

Publications

  • Kisling SG, Atri P, Shah A, Cox JL, Sharma S, Smith LM, Ghersi D, Batra SK. A Novel HOXA10-Associated 5-Gene-Based Prognostic Signature for Stratification of Short-term Survivors of Pancreatic Ductal Adenocarcinoma. Clinical cancer research : an official journal of the American Association for Cancer Research. 2023 Sep 15;29(18):3759-3770. PMID: 37432996
  • Wang G, Li J, Bojmar L, Chen H, Li Z, Tobias GC, Hu M, Homan EA, Lucotti S, Zhao F, Posada V, Oxley PR, Cioffi M, Kim HS, Wang H, Lauritzen P, Boudreau N, Shi Z, Burd CE, Zippin JH, Lo JC, Pitt GS, Hernandez J, Zambirinis CP, Hollingsworth MA, Grandgenett PM, Jain M, Batra SK, DiMaio DJ, Grem JL, Klute KA, Trippett TM, Egeblad M, Paul D, Bromberg J, Kelsen D, Rajasekhar VK, Healey JH, Matei IR, Jarnagin WR, Schwartz RE, Zhang H, Lyden D. Tumour extracellular vesicles and particles induce liver metabolic dysfunction. Nature. 2023 Jun;618(7964):374-382. Epub 2023 May 24. PMID: 37225988
  • Lall SP, Alsafwani ZW, Batra SK, Seshacharyulu P. ASPORIN: A root of the matter in tumors and their host environment. Biochimica et biophysica acta. Reviews on cancer. 2024 Jan;1879(1):189029. Epub 2023 Nov 24. PMID: 38008263
  • Shaw R, Lokshin AE, Miller MC, Messerlian-Lambert G, Moore RG. Stacking Machine Learning Algorithms for Biomarker-Based Preoperative Diagnosis of a Pelvic Mass. Cancers. 2022 Mar 2;14. (5). PMID: 35267599
  • Bhatia R, Bhyravbhatla N, Kisling A, Li X, Batra SK, Kumar S. Cytokines chattering in pancreatic ductal adenocarcinoma tumor microenvironment. Seminars in cancer biology. 2022 Nov;86(Pt 2):499-510. Epub 2022 Mar 26. PMID: 35346801
  • Muniyan S, Pothuraju R, Seshacharyulu P, Batra SK. Macrophage inhibitory cytokine-1 in cancer: Beyond the cellular phenotype. Cancer letters. 2022 Jun 28;536:215664. Epub 2022 Mar 26. PMID: 35351601
  • Ganguly K, Shah A, Atri P, Rauth S, Ponnusamy MP, Kumar S, Batra SK. Chemokine-mucinome interplay in shaping the heterogeneous tumor microenvironment of pancreatic cancer. Seminars in cancer biology. 2022 Nov;86(Pt 2):511-520. Epub 2022 Mar 26. PMID: 35346803