Program Official

Principal Investigator

Ru
Chen
Awardee Organization

Baylor College Of Medicine
United States

Fiscal Year
2022
Activity Code
R01
Early Stage Investigator Grants (ESI)
Not Applicable
Project End Date

Biomarkers for Early Detection of Colorectal Cancer in Ulcerative Colitis

Ulcerative colitis (UC) is a chronic inflammatory disease of the colon. Patients with extensive UC of more than 8 years duration have an increased risk of colorectal cancer (CRC) which approximates 0.5-1% per year of colitis; this leads to a recommendation for life-long surveillance colonoscopy. However, cancer surveillance for these patients is expensive, time-consuming and invasive. Moreover, the sensitivity of detecting dysplasia in colonoscopy is only moderate, largely due to the difficulty in detecting flat dysplastic lesions in the setting of UC. An objective molecular biomarker for dysplasia would have great clinical value in the management of cancer risk in UC patients. In our efforts for biomarker development for UC dysplasia, we previously discovered that the non-dysplastic mucosa is genetically abnormal in UC patients who have neoplasia elsewhere in their colon (progressors), i.e. there is a field defect phenomenon in UC progressors which is not present in UC nonprogressors (patients without dysplasia). Recently, we further discovered that the same field defect extends to abnormal expression of proteins in the non-dysplastic mucosa from the rectum of UC progressors. These findings are exciting because these protein changes occur in randomly sampled colon and/or rectal mucosa regardless of whether dysplasia is present or not. These abnormally expressed proteins could be valuable for developing biomarkers that are effective and relatively non-invasive for detecting UC dysplasia. One can envision that a random biopsy from an unprepped rectum would suffice to provide the sample needed for biomarker testing. This proposal seeks to develop molecular biomarkers for two purposes: 1) to detect current dysplasia/cancer; 2) to predict (track) future dysplasia/cancer progression. Molecular biomarkers will be developed by using cutting edge quantitative and then evaluated and validated using immunohistochemistry (IHC) and targeted proteomics methods. Finally, the molecular biomarkers will be evaluated for their clinical value in detecting and predicting UC neoplasia progression in different cohorts. We believe that this project will greatly improve the current surveillance strategy for early detection of UC-associated colorectal cancer.

Publications

  • Tsai HY, Bronner MP, March JK, Valentine JF, Shroyer NF, Lai LA, Brentnall TA, Pan S, Chen R. Metabolic targeting of NRF2 potentiates the efficacy of the TRAP1 inhibitor G-TPP through reduction of ROS detoxification in colorectal cancer. Cancer letters. 2022 Nov 28;549:215915. Epub 2022 Sep 13. PMID: 36113636
  • Ma C, Tsai HY, Zhang Q, Senavirathna L, Li L, Chin LS, Chen R, Pan S. An Integrated Proteomic and Glycoproteomic Investigation Reveals Alterations in the N-Glycoproteomic Network Induced by 2-Deoxy-D-Glucose in Colorectal Cancer Cells. International journal of molecular sciences. 2022 Jul 26;23. (15). PMID: 35897829
  • Pan S, Hullar MAJ, Lai LA, Peng H, May DH, Noble WS, Raftery D, Navarro SL, Neuhouser ML, Lampe PD, Lampe JW, Chen R. Gut Microbial Protein Expression in Response to Dietary Patterns in a Controlled Feeding Study: A Metaproteomic Approach. Microorganisms. 2020 Mar 7;8. (3). PMID: 32156071
  • Bhasin N, Dabral P, Senavirathna L, Pan S, Chen R. Inhibition of TRAP1 Accelerates the DNA Damage Response, Activation of the Heat Shock Response and Metabolic Reprogramming in Colon Cancer Cells. Frontiers in bioscience (Landmark edition). 2023 Sep 26;28(9):227. PMID: 37796715
  • Pan S, Chen R. Pathological implication of protein post-translational modifications in cancer. Molecular aspects of medicine. 2022 Aug;86:101097. Epub 2022 Apr 7. PMID: 35400524
  • Pan S, Chen R. Metaproteomic analysis of human gut microbiome in digestive and metabolic diseases. Advances in clinical chemistry. 2020;97:1-12. Epub 2020 Feb 17. PMID: 32448430
  • Chen R, Pan S. Increased neutrophil infiltration as a body-wide effect in pancreatic cancer development. EBioMedicine. 2022 Jul;81:104089. Epub 2022 Jun 2. PMID: 35665683
  • Senavirathna L, Ma C, Chen R, Pan S. Spectral Library-Based Single-Cell Proteomics Resolves Cellular Heterogeneity. Cells. 2022 Aug 7;11. (15). PMID: 35954294
  • Senavirathna L, Pan S, Chen R. Protein Advanced Glycation End Products and Their Implications in Pancreatic Cancer. Cancer prevention research (Philadelphia, Pa.). 2023 Nov 1;16(11):601-610. PMID: 37578815