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Principal Investigator
Matthew W Conklin
Awardee Organization

University Of Wisconsin-Madison
United States

Fiscal Year
2019
Activity Code
R01
Project End Date

Collagen structural changes as an early biomarker for breast carcinoma

We propose that collagen features, such as alignment, fiber straightness and width, and other features of extracellular matrix composition can be used as an early biomarker of breast cancer. It is the goal of this proposal to determine the range of collagen structural features that characterize normal, benign and early disease, to determine how these features relate to mammographic density, and to identify the features that best predict risk, recurrence, and progression. This proposal leverages a diverse collaborative team that includes experts in imaging and understanding the tumor microenvironment, breast surgery, experts in population health and biostatistics, and an expert in proteomic analysis of the ECM. This team will analyze a set of patient cohorts to develop imaging and analysis of collagen structure and ECM composition as a potential early biomarker for breast cancer. Aims: 1) Characterize collagen features that define heterogeneity of the normal state. 2) Characterize collagen features in pre- and early breast cancer lesions. 3) Characterize the proteomics of biopsies representing benign, at risk, and invasive breast cancer. Significance: This project meets the goals of the RFA to develop and validate combined imaging and biomarker approaches to improve early cancer detection and the diagnosis of early-stage cancers. Our findings have the potential to reduce overdiagnosis and false positives and discern lethal from non-lethal disease.

Publications

  • Keikhosravi A, Li B, Liu Y, Conklin MW, Loeffler AG, Eliceiri KW. Non-disruptive collagen characterization in clinical histopathology using cross-modality image synthesis. Communications biology. 2020 Jul 31;3(1):414. PMID: 32737412
  • Mukherjee L, Keikhosravi A, Bui D, Eliceiri KW. Convolutional neural networks for whole slide image superresolution. Biomedical optics express. 2018 Oct 12;9(11):5368-5386. doi: 10.1364/BOE.9.005368. eCollection 2018 Nov 1. PMID: 30460134
  • Mukherjee L, Bui HD, Keikhosravi A, Loeffler A, Eliceiri K. Super-resolution recurrent convolutional neural networks for learning with multi-resolution whole slide images. Journal of biomedical optics. 2019 Dec;24(12):1-15. PMID: 31837128
  • Keikhosravi A, Shribak M, Conklin MW, Liu Y, Li B, Loeffler A, Levenson RM, Eliceiri KW. Real-time polarization microscopy of fibrillar collagen in histopathology. Scientific reports. 2021 Sep 24;11(1):19063. PMID: 34561546
  • Liu Y, Eliceiri KW. Quantifying Fibrillar Collagen Organization with Curvelet Transform-Based Tools. Journal of visualized experiments : JoVE. 2020 Nov 11;(165). PMID: 33252107
  • Tomko LA, Hill RC, Barrett A, Szulczewski JM, Conklin MW, Eliceiri KW, Keely PJ, Hansen KC, Ponik SM. Targeted matrisome analysis identifies thrombospondin-2 and tenascin-C in aligned collagen stroma from invasive breast carcinoma. Scientific reports. 2018 Aug 28;8(1):12941. PMID: 30154546
  • Liu JTC, Glaser AK, Bera K, True LD, Reder NP, Eliceiri KW, Madabhushi A. Harnessing non-destructive 3D pathology. Nature biomedical engineering. 2021 Mar;5(3):203-218. Epub 2021 Feb 15. PMID: 33589781
  • Sprague BL, Vacek PM, Mulrow SE, Evans MF, Trentham-Dietz A, Herschorn SD, James TA, Surachaicharn N, Keikhosravi A, Eliceiri KW, Weaver DL, Conklin MW. Collagen Organization in Relation to Ductal Carcinoma In Situ Pathology and Outcomes. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2021 Jan;30(1):80-88. Epub 2020 Oct 20. PMID: 33082201
  • Liu Y, Keikhosravi A, Pehlke CA, Bredfeldt JS, Dutson M, Liu H, Mehta GS, Claus R, Patel AJ, Conklin MW, Inman DR, Provenzano PP, Sifakis E, Patel JM, Eliceiri KW. Fibrillar Collagen Quantification With Curvelet Transform Based Computational Methods. Frontiers in bioengineering and biotechnology. 2020 Apr 21;8:198. doi: 10.3389/fbioe.2020.00198. eCollection 2020. PMID: 32373594
  • Conklin MW, Gangnon RE, Sprague BL, Van Gemert L, Hampton JM, Eliceiri KW, Bredfeldt JS, Liu Y, Surachaicharn N, Newcomb PA, Friedl A, Keely PJ, Trentham-Dietz A. Collagen Alignment as a Predictor of Recurrence after Ductal Carcinoma In Situ. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2018 Feb;27(2):138-145. Epub 2017 Nov 15. PMID: 29141852