Program Official

Principal Investigator

Vadim
Backman
Awardee Organization

Northwestern University
United States

Fiscal Year
2016
Activity Code
R01
Project End Date

Nanoscale/Molecular analysis of Fecal Colonocytes for Colorectal Cancer Screening

Existing guidelines recommend colorectal cancer (CRC) screening for all patients over age 50. However, CRC remains the second leading cause of cancer death among Americans largely because colonoscopic screening of all the >100 million Americans over age 50 is unfeasible for both patient-related (non-compliance) and societal (inadequate endoscopic capacity and funding) reasons. Furthermore, the current practice of colonoscopy on the 3average risk4 population is remarkably inefficient2only ~6% of the screening population has significant neoplasia (advanced adenomas). Thus, a simple, non-invasive risk-stratification technique is critical to better target patients for colonoscopy. Stool analysis would be an ideal test that would engender the best patients6 compliance, although current stool tests assessing tumor cells or blood loss have dismal sensitivity. We propose a novel, more robust approach that utilizes mucus layer fecal colonocytes which are abraded from the epithelium and thus represent field carcinogenesis (the genetic/environmental fingerprint of neoplastic risk). Based on our preliminary data (156 patients), we hypothesize that the analysis of two complementary facets, nanostructural and molecular (microRNA) alterations, in mucus layer fecal colonocytes will serve as a highly accurate means of identifying field carcinogenesis and thereby serve as a non-invasive CRC screening test. Our approach is based on the combination of a novel biophotonics technology, partial wave spectroscopic microscopy (PWS), that is uniquely capable of imaging and quantification of the statistics of cell nanoscale organization and a new method to get high quality non-apoptotic fecal colonocytes in a practical fashion. In preclinical and clinical models, the performance characteristics of PWS and microRNA were outstanding, thus providing promise for a screening test. There are several requisite steps prior to the future definitive clinical validation. We will develop high-throughput PWS technology and identify the cellular location of the nanoarchitectural alterations. We will formulate and prospectively test a prediction rule that combines both nanostructural and molecular alterations. This project will confirm that nanostructural/ molecular stool analysis may provide sensitive, non-invasive risk-stratification tool, thereby heralding the era of personalized medicine for CRC population screening.

Publications

  • Yi J, Stypula-Cyrus Y, Blaha CS, Roy HK, Backman V. Fractal Characterization of Chromatin Decompaction in Live Cells. Biophysical journal. 2015 Dec 1;109(11):2218-26. PMID: 26636933
  • Cherkezyan L, Zhang D, Subramanian H, Taflove A, Backman V. Reconstruction of explicit structural properties at the nanoscale via spectroscopic microscopy. Journal of biomedical optics. 2016 Feb;21(2):25007. PMID: 26886803
  • Winkelmann JA, Eid A, Nguyen TQ, Bui T, Yi J, Backman V. In vivo broadband visible light optical coherence tomography probe enables inverse spectroscopic analysis. Optics letters. 2018 Feb 1;43(3):619-622. PMID: 29400855
  • Li Y, Almassalha LM, Chandler JE, Zhou X, Stypula-Cyrus YE, Hujsak KA, Roth EW, Bleher R, Subramanian H, Szleifer I, Dravid VP, Backman V. The effects of chemical fixation on the cellular nanostructure. Experimental cell research. 2017 Sep 15;358(2):253-259. Epub 2017 Jun 30. PMID: 28673821
  • Dong B, Song KH, Davis JL, Zhang HF, Sun C. Sub-10-nm distance measurements between fluorophores using photon-accumulation enhanced reconstruction (PACER). Advanced photonics research. 2020 Dec;1. (2). Epub 2020 Oct 14. PMID: 33709086
  • Kalman RS, Stawarz A, Nunes D, Zhang D, Dela Cruz MA, Mohanty A, Subramanian H, Backman V, Roy HK. Correction: Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study. PloS one. 2018 Jul 24;13(7):e0201500. doi: 10.1371/journal.pone.0201500. eCollection 2018. PMID: 30040862
  • Chandler JE, Subramanian H, Maneval CD, White CA, Levenson RM, Backman V. High-speed spectral nanocytology for early cancer screening. Journal of biomedical optics. 2013 Nov;18(11):117002. PMID: 24193949
  • Bauer GM, Stypula-Cyrus Y, Subramanian H, Cherkezyan L, Viswanathan P, Zhang D, Iyengar R, Bagalkar S, Derbas J, Graff T, Gladstein S, Almassalha LM, Chandler JE, Roy HK, Backman V. The transformation of the nuclear nanoarchitecture in human field carcinogenesis. Future science OA. 2017 May 5;3(3):FSO206. doi: 10.4155/fsoa-2017-0027. eCollection 2017 Aug. PMID: 28884003
  • Cherkezyan L, Zhang D, Subramanian H, Capoglu I, Taflove A, Backman V. Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials. Journal of biomedical optics. 2017 Mar 1;22(3):30901. PMID: 28290596
  • Li Y, Zhang D, Capoglu I, Hujsak KA, Damania D, Cherkezyan L, Roth E, Bleher R, Wu JS, Subramanian H, Dravid VP, Backman V. Measuring the Autocorrelation Function of Nanoscale Three-Dimensional Density Distribution in Individual Cells Using Scanning Transmission Electron Microscopy, Atomic Force Microscopy, and a New Deconvolution Algorithm. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 2017 Jun;23(3):661-667. Epub 2017 Apr 18. PMID: 28416035
  • Chowdhury S, Roy HK. The genetics and molecular biology of colonic neoplasia: practical implications for the clinician. Current opinion in gastroenterology. 2017 Jan;33(1):47-52. PMID: 27798442
  • Gladstein S, Almassalha LM, Cherkezyan L, Chandler JE, Eshein A, Eid A, Zhang D, Wu W, Bauer GM, Stephens AD, Morochnik S, Subramanian H, Marko JF, Ameer GA, Szleifer I, Backman V. Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm. Nature communications. 2019 Apr 10;10(1):1652. PMID: 30971691
  • Park DJ, Pradhan P, Backman V. Enhancing the sensitivity of mesoscopic light reflection statistics in weakly disordered media by interface reflections. International journal of modern physics. B. 2016 Sep 20;30. (23). Epub 2016 Jul 29. PMID: 29307948
  • Kalman RS, Stawarz A, Nunes D, Zhang D, Dela Cruz MA, Mohanty A, Subramanian H, Backman V, Roy HK. Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study. PloS one. 2018 May 17;13(5):e0197427. doi: 10.1371/journal.pone.0197427. eCollection 2018. PMID: 29771950
  • Dong B, Almassalha L, Urban BE, Nguyen TQ, Khuon S, Chew TL, Backman V, Sun C, Zhang HF. Super-resolution spectroscopic microscopy via photon localization. Nature communications. 2016 Jul 25;7:12290. PMID: 27452975
  • Ruderman S, Eshein A, Valuckaite V, Dougherty U, Almoghrabi A, Gomes A, Singh A, Pabla B, Roy HK, Hart J, Bissonnette M, Konda V, Backman V. Early increase in blood supply (EIBS) is associated with tumor risk in the Azoxymethane model of colon cancer. BMC cancer. 2018 Aug 13;18(1):814. PMID: 30103733
  • Zhang D, Capoglu I, Li Y, Cherkezyan L, Chandler J, Spicer G, Subramanian H, Taflove A, Backman V. Finite-difference time-domain-based optical microscopy simulation of dispersive media facilitates the development of optical imaging techniques. Journal of biomedical optics. 2016 Jun 1;21(6):65004. PMID: 27283256
  • Datta S, Sherva RM, De La Cruz M, Long MT, Roy P, Backman V, Chowdhury S, Roy HK. Single Nucleotide Polymorphism Facilitated Down-Regulation of the Cohesin Stromal Antigen-1: Implications for Colorectal Cancer Racial Disparities. Neoplasia (New York, N.Y.). 2018 Mar;20(3):289-294. Epub 2018 Feb 19. PMID: 29471289
  • Wali RK, Momi N, Dela Cruz M, Calderwood AH, Stypula-Cyrus Y, Almassalha L, Chhaparia A, Weber CR, Radosevich A, Tiwari AK, Latif B, Backman V, Roy HK. Higher Order Chromatin Modulator Cohesin SA1 Is an Early Biomarker for Colon Carcinogenesis: Race-Specific Implications. Cancer prevention research (Philadelphia, Pa.). 2016 Nov;9(11):844-854. Epub 2016 Aug 22. PMID: 27549371
  • Dong B, Almassalha LM, Stypula-Cyrus Y, Urban BE, Chandler JE, Nguyen TQ, Sun C, Zhang HF, Backman V. Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast. Proceedings of the National Academy of Sciences of the United States of America. 2016 Aug 30;113(35):9716-21. Epub 2016 Aug 17. PMID: 27535934
  • Urban BE, Dong B, Nguyen TQ, Backman V, Sun C, Zhang HF. Subsurface Super-resolution Imaging of Unstained Polymer Nanostructures. Scientific reports. 2016 Jun 29;6:28156. PMID: 27354178
  • Zhou X, Gladstein S, Almassalha LM, Li Y, Eshein A, Cherkezyan L, Viswanathan P, Subramanian H, Szleifer I, Backman V. Preservation of cellular nano-architecture by the process of chemical fixation for nanopathology. PloS one. 2019 Jul 22;14(7):e0219006. doi: 10.1371/journal.pone.0219006. eCollection 2019. PMID: 31329606
  • Momi N, Backman V, Brendler CB, Roy HK. Harnessing novel modalities: field carcinogenesis detection for personalizing prostate cancer management. Future oncology (London, England). 2015;11(20):2737-41. Epub 2015 Sep 16. PMID: 26374598
  • Yi J, Radosevich AJ, Stypula-Cyrus Y, Mutyal NN, Azarin SM, Horcher E, Goldberg MJ, Bianchi LK, Bajaj S, Roy HK, Backman V. Spatially resolved optical and ultrastructural properties of colorectal and pancreatic field carcinogenesis observed by inverse spectroscopic optical coherence tomography. Journal of biomedical optics. 2014 Mar;19(3):36013. PMID: 24643530
  • Winkelmann JA, Eid A, Spicer G, Almassalha LM, Nguyen TQ, Backman V. Spectral contrast optical coherence tomography angiography enables single-scan vessel imaging. Light, science & applications. 2019 Jan 16;8:7. doi: 10.1038/s41377-018-0117-7. eCollection 2019. PMID: 30651982
  • Wali RK, Hensing TA, Ray DW, Dela Cruz M, Tiwari AK, Radosevich A, Jepeal L, Fernando HC, Litle VR, Charlot M, Momi N, Backman V, Roy HK. Buccal microRNA dysregulation in lung field carcinogenesis: gender-specific implications. International journal of oncology. 2014 Sep;45(3):1209-15. Epub 2014 Jun 11. PMID: 24919547
  • Gladstein S, Damania D, Almassalha LM, Smith LT, Gupta V, Subramanian H, Rex DK, Roy HK, Backman V. Correlating colorectal cancer risk with field carcinogenesis progression using partial wave spectroscopic microscopy. Cancer medicine. 2018 May;7(5):2109-2120. Epub 2018 Mar 23. PMID: 29573208
  • Liu R, Winkelmann JA, Spicer G, Zhu Y, Eid A, Ameer GA, Backman V, Yi J. Single capillary oximetry and tissue ultrastructural sensing by dual-band dual-scan inverse spectroscopic optical coherence tomography. Light, science & applications. 2018 Aug 29;7:57. doi: 10.1038/s41377-018-0057-2. eCollection 2018. PMID: 30839641
  • Damania D, Subramanian H, Backman V, Anderson EC, Wong MH, McCarty OJ, Phillips KG. Network signatures of nuclear and cytoplasmic density alterations in a model of pre and postmetastatic colorectal cancer. Journal of biomedical optics. 2014 Jan;19(1):16016. PMID: 24441943
  • Cherkezyan L, Stypula-Cyrus Y, Subramanian H, White C, Dela Cruz M, Wali RK, Goldberg MJ, Bianchi LK, Roy HK, Backman V. Nanoscale changes in chromatin organization represent the initial steps of tumorigenesis: a transmission electron microscopy study. BMC cancer. 2014 Mar 14;14:189. PMID: 24629088
  • Zhang D, Cherkezyan L, Capoglu I, Subramanian H, Chandler J, Thompson S, Taflove A, Backman V. Spectroscopic microscopy can quantify the statistics of subdiffractional refractive-index fluctuations in media with random rough surfaces. Optics letters. 2015 Nov 1;40(21):4931-4. PMID: 26512486
  • Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, Backman V. The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression. Scientific reports. 2017 Jan 24;7:41061. PMID: 28117353
  • Miao Q, Derbas J, Eid A, Subramanian H, Backman V. Automated Cell Selection Using Support Vector Machine for Application to Spectral Nanocytology. BioMed research international. 2016;2016:6090912. Epub 2016 Jan 19. PMID: 26904682
  • Chandler JE, Cherkezyan L, Subramanian H, Backman V. Nanoscale refractive index fluctuations detected via sparse spectral microscopy. Biomedical optics express. 2016 Feb 19;7(3):883-93. doi: 10.1364/BOE.7.000883. eCollection 2016 Mar 1. PMID: 27231596
  • Liu R, Song W, Backman V, Yi J. Quantitative quality-control metrics for in vivo oximetry in small vessels by visible light optical coherence tomography angiography. Biomedical optics express. 2019 Jan 8;10(2):465-486. doi: 10.1364/BOE.10.000465. eCollection 2019 Feb 1. PMID: 30800493
  • Dong B, Almassalha LM, Soetikno BT, Chandler JE, Nguyen TQ, Urban BE, Sun C, Zhang HF, Backman V. Stochastic fluorescence switching of nucleic acids under visible light illumination. Optics express. 2017 Apr 3;25(7):7929-7944. PMID: 28380910
  • Roy HK, Backman V. Spectroscopic applications in gastrointestinal endoscopy. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 2012 Dec;10(12):1335-41. Epub 2012 Oct 8. PMID: 23059052
  • Roy HK, Damania DP, DelaCruz M, Kunte DP, Subramanian H, Crawford SE, Tiwari AK, Wali RK, Backman V. Nano-architectural alterations in mucus layer fecal colonocytes in field carcinogenesis: potential for screening. Cancer prevention research (Philadelphia, Pa.). 2013 Oct;6(10):1111-9. Epub 2013 Aug 27. PMID: 23983085
  • Almassalha LM, Bauer GM, Wu W, Cherkezyan L, Zhang D, Kendra A, Gladstein S, Chandler JE, VanDerway D, Seagle BL, Ugolkov A, Billadeau DD, O'Halloran TV, Mazar AP, Roy HK, Szleifer I, Shahabi S, Backman V. Macrogenomic engineering via modulation of the scaling of chromatin packing density. Nature biomedical engineering. 2017 Nov;1(11):902-913. Epub 2017 Nov 6. PMID: 29450107
  • Cruz MD, Ledbetter S, Chowdhury S, Tiwari AK, Momi N, Wali RK, Bliss C, Huang C, Lichtenstein D, Bhattacharya S, Varma-Wilson A, Backman V, Roy HK. Metabolic reprogramming of the premalignant colonic mucosa is an early event in carcinogenesis. Oncotarget. 2017 Mar 28;8(13):20543-20557. PMID: 28423551
  • Roy HK, Brendler CB, Subramanian H, Zhang D, Maneval C, Chandler J, Bowen L, Kaul KL, Helfand BT, Wang CH, Quinn M, Petkewicz J, Paterakos M, Backman V. Nanocytological field carcinogenesis detection to mitigate overdiagnosis of prostate cancer: a proof of concept study. PloS one. 2015 Feb 23;10(2):e0115999. doi: 10.1371/journal.pone.0115999. eCollection 2015. PMID: 25706755
  • Calderwood AH, Lasser KE, Roy HK. Colon adenoma features and their impact on risk of future advanced adenomas and colorectal cancer. World journal of gastrointestinal oncology. 2016 Dec 15;8(12):826-834. PMID: 28035253
  • Backman V, Roy HK. Advances in biophotonics detection of field carcinogenesis for colon cancer risk stratification. Journal of Cancer. 2013;4(3):251-61. Epub 2013 Mar 15. PMID: 23459690
  • Almassalha LM, Bauer GM, Chandler JE, Gladstein S, Szleifer I, Roy HK, Backman V. The Greater Genomic Landscape: The Heterogeneous Evolution of Cancer. Cancer research. 2016 Oct 1;76(19):5605-5609. Epub 2016 Aug 22. PMID: 27550448
  • Almassalha LM, Bauer GM, Chandler JE, Gladstein S, Cherkezyan L, Stypula-Cyrus Y, Weinberg S, Zhang D, Thusgaard Ruhoff P, Roy HK, Subramanian H, Chandel NS, Szleifer I, Backman V. Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy. Proceedings of the National Academy of Sciences of the United States of America. 2016 Oct 18;113(42):E6372-E6381. Epub 2016 Oct 4. PMID: 27702891
  • Physical Sciences - Oncology Centers Network, Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, Damania D, Davies PC, Decuzzi P, Dickinson L, Estevez-Salmeron L, Estrella V, Ferrari M, Fischbach C, Foo J, Fraley SI, Frantz C, Fuhrmann A, Gascard P, Gatenby RA, Geng Y, Gerecht S, Gillies RJ, Godin B, Grady WM, Greenfield A, Hemphill C, Hempstead BL, Hielscher A, Hillis WD, Holland EC, Ibrahim-Hashim A, Jacks T, Johnson RH, Joo A, Katz JE, Kelbauskas L, Kesselman C, King MR, Konstantopoulos K, Kraning-Rush CM, Kuhn P, Kung K, Kwee B, Lakins JN, Lambert G, Liao D, Licht JD, Liphardt JT, Liu L, Lloyd MC, Lyubimova A, Mallick P, Marko J, McCarty OJ, Meldrum DR, Michor F, Mumenthaler SM, Nandakumar V, O'Halloran TV, Oh S, Pasqualini R, Paszek MJ, Philips KG, Poultney CS, Rana K, Reinhart-King CA, Ros R, Semenza GL, Senechal P, Shuler ML, Srinivasan S, Staunton JR, Stypula Y, Subramanian H, Tlsty TD, Tormoen GW, Tseng Y, van Oudenaarden A, Verbridge SS, Wan JC, Weaver VM, Widom J, Will C, Wirtz D, Wojtkowiak J, Wu PH. A physical sciences network characterization of non-tumorigenic and metastatic cells. Scientific reports. 2013;3:1449. PMID: 23618955
  • Calderwood AH, Roy HK. Increasing colorectal cancer screening adherence: comment on "A randomized comparison of print and web communication on colorectal cancer screening". JAMA internal medicine. 2013 Jan 28;173(2):129-31. PMID: 23247843
  • Cruz MD, Wali RK, Bianchi LK, Radosevich AJ, Crawford SE, Jepeal L, Goldberg MJ, Weinstein J, Momi N, Roy P, Calderwood AH, Backman V, Roy HK. Colonic mucosal fatty acid synthase as an early biomarker for colorectal neoplasia: modulation by obesity and gender. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2014 Nov;23(11):2413-21. Epub 2014 Aug 25. PMID: 25155760
  • Stypula-Cyrus Y, Mutyal NN, Dela Cruz M, Kunte DP, Radosevich AJ, Wali R, Roy HK, Backman V. End-binding protein 1 (EB1) up-regulation is an early event in colorectal carcinogenesis. FEBS letters. 2014 Mar 3;588(5):829-35. Epub 2014 Feb 1. PMID: 24492008