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The glycosyltransferase GnT-III activates Notch signaling and drives stem cell expansion to promote the growth and invasion of ovarian cancer.

Allam H,  Johnson BP,  Zhang M,  Lu Z,  Cannon MJ,  Abbott KL
J Biol Chem 2017 Sep 29;292(39):16351-16359
PubMed ID: 28842505
PMC ID: PMC5625063
Groups or Programs: Alliance of Glycobiologists

Changes in the expression of N- and O-glycopeptides in patients with colorectal cancer and hepatocellular carcinoma quantified by full-MS scan FT-ICR and multiple reaction monitoring.

Darebna P,  Novak P,  Kucera R,  Topolcan O,  Sanda M,  Goldman R,  Pompach P
J Proteomics 2017 Feb 5;153:44-52
PubMed ID: 27646713
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Site-specific analysis of changes in the glycosylation of proteins in liver cirrhosis using data-independent workflow with soft fragmentation.

Sanda M,  Zhang L,  Edwards NJ,  Goldman R
Anal Bioanal Chem 2017 Jan;409(2):619-627
PubMed ID: 27822650
PMC ID: PMC5370557
Groups or Programs: Alliance of Glycobiologists

Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk.

Kudelka MR,  Hinrichs BH,  Darby T,  Moreno CS,  Nishio H,  Cutler CE,  Wang J,  Wu H,  Zeng J,  Wang Y,  Ju T,  Stowell SR,  Nusrat A,  Jones RM,  Neish AS,  Cummings RD
Proc Natl Acad Sci U S A 2016 Dec 20;113(51):14787-14792
PubMed ID: 27930307
PMC ID: PMC5187739
Groups or Programs: Alliance of Glycobiologists

Development and application of a novel recombinant Aleuria aurantia lectin with enhanced core fucose binding for identification of glycoprotein biomarkers of hepatocellular carcinoma.

Norton P,  Comunale MA,  Herrera H,  Wang M,  Houser J,  Wimmerova M,  Romano PR,  Mehta A
Proteomics 2016 Dec;16(24):3126-3136
PubMed ID: 27650323
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Data Independent Analysis of IgG Glycoforms in Samples of Unfractionated Human Plasma.

Sanda M,  Goldman R
Anal Chem 2016 Oct 18;88(20):10118-10125
PubMed ID: 27649061
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Multimodal Mass Spectrometry Imaging of N-Glycans and Proteins from the Same Tissue Section.

Heijs B,  Holst S,  Briaire-de Bruijn IH,  van Pelt GW,  de Ru AH,  van Veelen PA,  Drake RR,  Mehta AS,  Mesker WE,  Tollenaar RA,  Bovée JV,  Wuhrer M,  McDonnell LA
Anal Chem 2016 Aug 2;88(15):7745-53
PubMed ID: 27373711
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Identification of IgM as a contaminant in lectin-FLISA assays for HCC detection.

Wang M,  Comunale MA,  Herrera H,  Betesh L,  Kono Y,  Mehta A
Biochem Biophys Res Commun 2016 Jul 29;476(3):140-5
PubMed ID: 27181357
PMC ID: PMC5067009
Groups or Programs: Alliance of Glycobiologists

Linkage-Specific in Situ Sialic Acid Derivatization for N-Glycan Mass Spectrometry Imaging of Formalin-Fixed Paraffin-Embedded Tissues.

Holst S,  Heijs B,  de Haan N,  van Zeijl RJ,  Briaire-de Bruijn IH,  van Pelt GW,  Mehta AS,  Angel PM,  Mesker WE,  Tollenaar RA,  Drake RR,  Bovée JV,  McDonnell LA,  Wuhrer M
Anal Chem 2016 Jun 7;88(11):5904-13
PubMed ID: 27145236
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Glycans related to the CA19-9 antigen are elevated in distinct subsets of pancreatic cancers and improve diagnostic accuracy over CA19-9.

Tang H,  Partyka K,  Hsueh P,  Sinha JY,  Kletter D,  Zeh H,  Huang Y,  Brand RE,  Haab BB
Cell Mol Gastroenterol Hepatol 2016 Feb 1;2(2):201-221.e15
PubMed ID: 26998508
PMC ID: PMC4792034
Groups or Programs: Alliance of Glycobiologists

Cellular O-Glycome Reporter/Amplification to explore O-glycans of living cells.

Kudelka MR,  Antonopoulos A,  Wang Y,  Duong DM,  Song X,  Seyfried NT,  Dell A,  Haslam SM,  Cummings RD,  Ju T
Nat Methods 2016 Jan;13(1):81-6
PubMed ID: 26619014
PMC ID: PMC4697867
Groups or Programs: Alliance of Glycobiologists

SULF2 Expression Is a Potential Diagnostic and Prognostic Marker in Lung Cancer.

Lui NS,  Yang YW,  van Zante A,  Buchanan P,  Jablons DM,  Lemjabbar-Alaoui H
PLoS One 2016;11(2):e0148911
PubMed ID: 26882224
PMC ID: PMC4755530
Groups or Programs: Alliance of Glycobiologists

Increased sialylation of site specific O-glycoforms of hemopexin in liver disease.

Sanda M,  Benicky J,  Wu J,  Wang Y,  Makambi K,  Ahn J,  Smith CI,  Zhao P,  Zhang L,  Goldman R
Clin Proteomics 2016;13:24
PubMed ID: 27688741
PMC ID: PMC5034550
Groups or Programs: Alliance of Glycobiologists

Total syntheses of disulphated glycosphingolipid SB1a and the related monosulphated SM1a.

Hirose H,  Tamai H,  Gao C,  Imamura A,  Ando H,  Ishida H,  Feizi T,  Kiso M
Org Biomol Chem 2015 Dec 7;13(45):11105-17
PubMed ID: 26399908
PMC ID: PMC4920060
Groups or Programs: Alliance of Glycobiologists

Lung cancer: Biology and treatment options.

Lemjabbar-Alaoui H,  Hassan OU,  Yang YW,  Buchanan P
Biochim Biophys Acta 2015 Dec;1856(2):189-210
PubMed ID: 26297204
PMC ID: PMC4663145
Groups or Programs: Alliance of Glycobiologists

Two-Dimensional N-Glycan Distribution Mapping of Hepatocellular Carcinoma Tissues by MALDI-Imaging Mass Spectrometry.

Powers TW,  Holst S,  Wuhrer M,  Mehta AS,  Drake RR
Biomolecules 2015 Oct 15;5(4):2554-72
PubMed ID: 26501333
PMC ID: PMC4693247
Groups or Programs: Alliance of Glycobiologists

Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins.

Singh S,  Pal K,  Yadav J,  Tang H,  Partyka K,  Kletter D,  Hsueh P,  Ensink E,  Kc B,  Hostetter G,  Xu HE,  Bern M,  Smith DF,  Mehta AS,  Brand R,  Melcher K,  Haab BB
J Proteome Res 2015 Jun 5;14(6):2594-605
PubMed ID: 25938165
PMC ID: PMC4511852
Groups or Programs: Alliance of Glycobiologists

Glycan motif profiling reveals plasma sialyl-lewis x elevations in pancreatic cancers that are negative for sialyl-lewis A.

Tang H,  Singh S,  Partyka K,  Kletter D,  Hsueh P,  Yadav J,  Ensink E,  Bern M,  Hostetter G,  Hartman D,  Huang Y,  Brand RE,  Haab BB
Mol Cell Proteomics 2015 May;14(5):1323-33
PubMed ID: 25733690
PMC ID: PMC4424402
Groups or Programs: Alliance of Glycobiologists

Quantitative analysis of immunoglobulin subclasses and subclass specific glycosylation by LC-MS-MRM in liver disease.

Yuan W,  Sanda M,  Wu J,  Koomen J,  Goldman R
J Proteomics 2015 Feb 26;116:24-33
PubMed ID: 25582524
PMC ID: PMC4329072
Groups or Programs: Alliance of Glycobiologists

SULF2, a heparan sulfate endosulfatase, is present in the blood of healthy individuals and increases in cirrhosis.

Singer MS,  Phillips JJ,  Lemjabbar-Alaoui H,  Wang YQ,  Wu J,  Goldman R,  Rosen SD
Clin Chim Acta 2015 Feb 2;440:72-8
PubMed ID: 25444749
PMC ID: PMC4305470
Groups or Programs: Alliance of Glycobiologists

Targeted methods for quantitative analysis of protein glycosylation.

Goldman R,  Sanda M
Proteomics Clin Appl 2015 Feb;9(1-2):17-32
PubMed ID: 25522218
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Glycomic analysis of membrane glycoproteins with bisecting glycosylation from ovarian cancer tissues reveals novel structures and functions.

Allam H,  Aoki K,  Benigno BB,  McDonald JF,  Mackintosh SG,  Tiemeyer M,  Abbott KL
J Proteome Res 2015 Jan 2;14(1):434-46
PubMed ID: 25437919
PMC ID: PMC4286206
Groups or Programs: Alliance of Glycobiologists

Functional impact of tumor-specific N-linked glycan changes in breast and ovarian cancers.

Guo H,  Abbott KL
Adv Cancer Res 2015;126:281-303
PubMed ID: 25727151
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Simple sugars to complex disease--mucin-type O-glycans in cancer.

Kudelka MR,  Ju T,  Heimburg-Molinaro J,  Cummings RD
Adv Cancer Res 2015;126:53-135
PubMed ID: 25727146
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Glycosylation alterations in lung and brain cancer.

Lemjabbar-Alaoui H,  McKinney A,  Yang YW,  Tran VM,  Phillips JJ
Adv Cancer Res 2015;126:305-44
PubMed ID: 25727152
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Glycosylation and liver cancer.

Mehta A,  Herrera H,  Block T
Adv Cancer Res 2015;126:257-79
PubMed ID: 25727150
PMC ID: PMC4634841
Groups or Programs: Alliance of Glycobiologists

Structure-function analysis of hepatitis C virus envelope glycoproteins E1 and E2.

Nayak A,  Pattabiraman N,  Fadra N,  Goldman R,  Kosakovsky Pond SL,  Mazumder R
J Biomol Struct Dyn 2015;33(8):1682-94
PubMed ID: 25245635
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

The detection and discovery of glycan motifs in biological samples using lectins and antibodies: new methods and opportunities.

Tang H,  Hsueh P,  Kletter D,  Bern M,  Haab B
Adv Cancer Res 2015;126:167-202
PubMed ID: 25727148
PMC ID: PMC4484597
Groups or Programs: Alliance of Glycobiologists

Carbohydrate Microarrays Identify Blood Group Precursor Cryptic Epitopes as Potential Immunological Targets of Breast Cancer.

Wang D,  Tang J,  Liu S,  Huang J
J Immunol Res 2015;2015:510810
PubMed ID: 26539555
PMC ID: PMC4619957
Groups or Programs: Alliance of Glycobiologists

Protein and site specificity of fucosylation in liver-secreted glycoproteins.

Pompach P,  Ashline DJ,  Brnakova Z,  Benicky J,  Sanda M,  Goldman R
J Proteome Res 2014 Dec 5;13(12):5561-9
PubMed ID: 25265424
PMC ID: PMC4261953
Groups or Programs: Alliance of Glycobiologists

Quantification of fucosylated hemopexin and complement factor H in plasma of patients with liver disease.

Benicky J,  Sanda M,  Pompach P,  Wu J,  Goldman R
Anal Chem 2014 Nov 4;86(21):10716-23
PubMed ID: 25302577
PMC ID: PMC4222631
Groups or Programs: Alliance of Glycobiologists

Immature truncated O-glycophenotype of cancer directly induces oncogenic features.

Radhakrishnan P,  Dabelsteen S,  Madsen FB,  Francavilla C,  Kopp KL,  Steentoft C,  Vakhrushev SY,  Olsen JV,  Hansen L,  Bennett EP,  Woetmann A,  Yin G,  Chen L,  Song H,  Bak M,  Hlady RA,  Peters SL,  Opavsky R,  Thode C,  Qvortrup K,  Schjoldager KT,  Clausen H,  Hollingsworth MA,  Wandall HH
Proc Natl Acad Sci U S A 2014 Sep 30;111(39):E4066-75
PubMed ID: 25118277
PMC ID: PMC4191756
Groups or Programs: Alliance of Glycobiologists

Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4.

Chandler KB,  Brnakova Z,  Sanda M,  Wang S,  Stalnaker SH,  Bridger R,  Zhao P,  Wells L,  Edwards NJ,  Goldman R
J Proteome Res 2014 Jul 3;13(7):3314-29
PubMed ID: 24884609
PMC ID: PMC4084840
Groups or Programs: Alliance of Glycobiologists

Carbohydrate sequence of the prostate cancer-associated antigen F77 assigned by a mucin O-glycome designer array.

Gao C,  Liu Y,  Zhang H,  Zhang Y,  Fukuda MN,  Palma AS,  Kozak RP,  Childs RA,  Nonaka M,  Li Z,  Siegel DL,  Hanfland P,  Peehl DM,  Chai W,  Greene MI,  Feizi T
J Biol Chem 2014 Jun 6;289(23):16462-77
PubMed ID: 24753245
PMC ID: PMC4047413
Groups or Programs: Alliance of Glycobiologists

Determination of carbohydrate structure recognized by prostate-specific F77 monoclonal antibody through expression analysis of glycosyltransferase genes.

Nonaka M,  Fukuda MN,  Gao C,  Li Z,  Zhang H,  Greene MI,  Peehl DM,  Feizi T,  Fukuda M
J Biol Chem 2014 Jun 6;289(23):16478-86
PubMed ID: 24753248
PMC ID: PMC4047414
Groups or Programs: Alliance of Glycobiologists

Uncovering cryptic glycan markers in multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE).

Wang D,  Bhat R,  Sobel RA,  Huang W,  Wang LX,  Olsson T,  Steinman L
Drug Dev Res 2014 May;75(3):172-88
PubMed ID: 24648292
PMC ID: PMC4019697
Groups or Programs: Alliance of Glycobiologists

Glyco-epitope Diversity: An Evolving Area of Glycomics Research and Biomarker Discovery.

Wang D
J Proteomics Bioinform 2014 Feb 25;7(2)
PubMed ID: 25378871
PMC ID: PMC4219575
Groups or Programs: Alliance of Glycobiologists

Discrimination between adenocarcinoma and normal pancreatic ductal fluid by proteomic and glycomic analysis.

Porterfield M,  Zhao P,  Han H,  Cunningham J,  Aoki K,  Von Hoff DD,  Demeure MJ,  Pierce JM,  Tiemeyer M,  Wells L
J Proteome Res 2014 Feb 7;13(2):395-407
PubMed ID: 24328148
PMC ID: PMC3946306
Groups or Programs: Alliance of Glycobiologists

The neoglycolipid (NGL)-based oligosaccharide microarray system poised to decipher the meta-glycome.

Palma AS,  Feizi T,  Childs RA,  Chai W,  Liu Y
Curr Opin Chem Biol 2014 Feb;18:87-94
PubMed ID: 24508828
PMC ID: PMC4105633
Groups or Programs: Alliance of Glycobiologists

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.

Cole C,  Krampis K,  Karagiannis K,  Almeida JS,  Faison WJ,  Motwani M,  Wan Q,  Golikov A,  Pan Y,  Simonyan V,  Mazumder R
BMC Bioinformatics 2014 Jan 27;15:28
PubMed ID: 24467687
PMC ID: PMC3916084
Groups or Programs: Alliance of Glycobiologists

The challenge and promise of glycomics.

Cummings RD,  Pierce JM
Chem Biol 2014 Jan 16;21(1):1-15
PubMed ID: 24439204
PMC ID: PMC3955176
Groups or Programs: Alliance of Glycobiologists

Elevated levels of glycosylphosphatidylinositol (GPI) anchored proteins in plasma from human cancers detected by C. septicum alpha toxin.

Dolezal S,  Hester S,  Kirby PS,  Nairn A,  Pierce M,  Abbott KL
Cancer Biomark 2014 Jan 1;14(1):55-62
PubMed ID: 24643042
PMC ID: PMC4157464
Groups or Programs: Alliance of Glycobiologists

The Cosmc connection to the Tn antigen in cancer.

Ju T,  Aryal RP,  Kudelka MR,  Wang Y,  Cummings RD
Cancer Biomark 2014 Jan 1;14(1):63-81
PubMed ID: 24643043
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

MALDI imaging mass spectrometry profiling of N-glycans in formalin-fixed paraffin embedded clinical tissue blocks and tissue microarrays.

Powers TW,  Neely BA,  Shao Y,  Tang H,  Troyer DA,  Mehta AS,  Haab BB,  Drake RR
PLoS One 2014;9(9):e106255
PubMed ID: 25184632
PMC ID: PMC4153616
Groups or Programs: Alliance of GlycobiologistsAlliance of Glycobiologists

Matrix assisted laser desorption ionization imaging mass spectrometry workflow for spatial profiling analysis of N-linked glycan expression in tissues.

Powers TW,  Jones EE,  Betesh LR,  Romano PR,  Gao P,  Copland JA,  Mehta AS,  Drake RR
Anal Chem 2013 Oct 15;85(20):9799-806
PubMed ID: 24050758
PMC ID: PMC3969840
Groups or Programs: Alliance of GlycobiologistsAlliance of Glycobiologists

Total serum glycan analysis is superior to lectin-FLISA for the early detection of hepatocellular carcinoma.

Comunale MA,  Wang M,  Anbarasan N,  Betesh L,  Karabudak A,  Moritz E,  Devarajan K,  Marrero J,  Block TM,  Mehta A
Proteomics Clin Appl 2013 Oct;7(9-10):690-700
PubMed ID: 23857719
PMC ID: PMC4603546
Groups or Programs: Alliance of Glycobiologists

Tn and sialyl-Tn antigens, aberrant O-glycomics as human disease markers.

Ju T,  Wang Y,  Aryal RP,  Lehoux SD,  Ding X,  Kudelka MR,  Cutler C,  Zeng J,  Wang J,  Sun X,  Heimburg-Molinaro J,  Smith DF,  Cummings RD
Proteomics Clin Appl 2013 Oct;7(9-10):618-31
PubMed ID: 23857728
PMC ID: not available
Groups or Programs: Alliance of Glycobiologists

Prediction of glycan motifs using quantitative analysis of multi-lectin binding: Motifs on MUC1 produced by cultured pancreatic cancer cells.

McCarter C,  Kletter D,  Tang H,  Partyka K,  Ma Y,  Singh S,  Yadav J,  Bern M,  Haab BB
Proteomics Clin Appl 2013 Oct;7(9-10):632-41
PubMed ID: 23956151
PMC ID: PMC3929537
Groups or Programs: Alliance of Glycobiologists

Increased bisecting N-acetylglucosamine and decreased branched chain glycans of N-linked glycoproteins in expressed prostatic secretions associated with prostate cancer progression.

Nyalwidhe JO,  Betesh LR,  Powers TW,  Jones EE,  White KY,  Burch TC,  Brooks J,  Watson MT,  Lance RS,  Troyer DA,  Semmes OJ,  Mehta A,  Drake RR
Proteomics Clin Appl 2013 Oct;7(9-10):677-89
PubMed ID: 23775902
PMC ID: PMC3969874
Groups or Programs: Alliance of Glycobiologists

Using antibody arrays to measure protein abundance and glycosylation: considerations for optimal performance.

Haab BB,  Partyka K,  Cao Z
Curr Protoc Protein Sci 2013 Sep 24;73:Unit 27.6
PubMed ID: 24510592
PMC ID: PMC3920461
Groups or Programs: Alliance of Glycobiologists