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A Novel Mass Spectrometry Platform for Multiplexed N-Glycoprotein Biomarker Discovery from Patient Biofluids by Antibody Panel Based N-Glycan Imaging.

Black AP,  Liang H,  West CA,  Wang M,  Herrera HP,  Haab BB,  Angel PM,  Drake RR,  Mehta AS
Anal Chem 2019 Jul 2;91(13):8429-8435
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 31177770
PMC ID: not available

The sTRA Plasma Biomarker: Blinded Validation of Improved Accuracy Over CA19-9 in Pancreatic Cancer Diagnosis.

Staal B,  Liu Y,  Barnett D,  Hsueh P,  He Z,  Gao C,  Partyka K,  Hurd MW,  Singhi AD,  Drake RR,  Huang Y,  Maitra A,  Brand RE,  Haab BB
Clin Cancer Res 2019 May 1;25(9):2745-2754
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 30617132
PMC ID: not available

Generation of a Fully Human scFv that binds Tumor-Specific Glycoforms.

Lu Z,  Kamat K,  Johnson BP,  Yin CC,  Scholler N,  Abbott KL
Sci Rep 2019 Mar 25;9(1):5101
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 30911061
PMC ID: PMC6433917

Deciphering Protein Glycosylation by Computational Integration of On-chip Profiling, Glycan-array Data, and Mass Spectrometry.

Klamer Z,  Hsueh P,  Ayala-Talavera D,  Haab B
Mol Cell Proteomics 2019 Jan;18(1):28-40
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 30257876
PMC ID: PMC6317472

Biomarker analysis of fucosylated kininogen through depletion of lectin reactive heterophilic antibodies in hepatocellular carcinoma.

Wang M,  Shen J,  Herrera H,  Singal A,  Swindell C,  Renquan L,  Mehta A
J Immunol Methods 2018 Nov;462:59-64
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 30144410
PMC ID: not available

N-Linked Glycan Branching and Fucosylation Are Increased Directly in Hcc Tissue As Determined through in Situ Glycan Imaging.

West CA,  Wang M,  Herrera H,  Liang H,  Black A,  Angel PM,  Drake RR,  Mehta AS
J Proteome Res 2018 Oct 5;17(10):3454-3462
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 30110170
PMC ID: not available

Mining High-Complexity Motifs in Glycans: A New Language To Uncover the Fine Specificities of Lectins and Glycosidases.

Klamer Z,  Staal B,  Prudden AR,  Liu L,  Smith DF,  Boons GJ,  Haab B
Anal Chem 2017 Nov 21;89(22):12342-12350
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 29058413
PMC ID: PMC5700451

The glycosyltransferase GnT-III activates Notch signaling and drives stem cell expansion to promote the growth and invasion of ovarian cancer.

Allam H,  Johnson BP,  Zhang M,  Lu Z,  Cannon MJ,  Abbott KL
J Biol Chem 2017 Sep 29;292(39):16351-16359
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 28842505
PMC ID: PMC5625063

The CA19-9 and Sialyl-TRA Antigens Define Separate Subpopulations of Pancreatic Cancer Cells.

Barnett D,  Liu Y,  Partyka K,  Huang Y,  Tang H,  Hostetter G,  Brand RE,  Singhi AD,  Drake RR,  Haab BB
Sci Rep 2017 Jun 22;7(1):4020
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 28642461
PMC ID: PMC5481434

Changes in the expression of N- and O-glycopeptides in patients with colorectal cancer and hepatocellular carcinoma quantified by full-MS scan FT-ICR and multiple reaction monitoring.

Darebna P,  Novak P,  Kucera R,  Topolcan O,  Sanda M,  Goldman R,  Pompach P
J Proteomics 2017 Feb 5;153:44-52
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27646713
PMC ID: PMC5803557

Site-specific analysis of changes in the glycosylation of proteins in liver cirrhosis using data-independent workflow with soft fragmentation.

Sanda M,  Zhang L,  Edwards NJ,  Goldman R
Anal Bioanal Chem 2017 Jan;409(2):619-627
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27822650
PMC ID: PMC5370557

Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk.

Kudelka MR,  Hinrichs BH,  Darby T,  Moreno CS,  Nishio H,  Cutler CE,  Wang J,  Wu H,  Zeng J,  Wang Y,  Ju T,  Stowell SR,  Nusrat A,  Jones RM,  Neish AS,  Cummings RD
Proc Natl Acad Sci U S A 2016 Dec 20;113(51):14787-14792
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27930307
PMC ID: PMC5187739

Development and application of a novel recombinant Aleuria aurantia lectin with enhanced core fucose binding for identification of glycoprotein biomarkers of hepatocellular carcinoma.

Norton P,  Comunale MA,  Herrera H,  Wang M,  Houser J,  Wimmerova M,  Romano PR,  Mehta A
Proteomics 2016 Dec;16(24):3126-3136
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27650323
PMC ID: PMC5869706

Data Independent Analysis of IgG Glycoforms in Samples of Unfractionated Human Plasma.

Sanda M,  Goldman R
Anal Chem 2016 Oct 18;88(20):10118-10125
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27649061
PMC ID: PMC5803558

Multimodal Mass Spectrometry Imaging of N-Glycans and Proteins from the Same Tissue Section.

Heijs B,  Holst S,  Briaire-de Bruijn IH,  van Pelt GW,  de Ru AH,  van Veelen PA,  Drake RR,  Mehta AS,  Mesker WE,  Tollenaar RA,  Bovée JV,  Wuhrer M,  McDonnell LA
Anal Chem 2016 Aug 2;88(15):7745-53
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27373711
PMC ID: not available

Identification of IgM as a contaminant in lectin-FLISA assays for HCC detection.

Wang M,  Comunale MA,  Herrera H,  Betesh L,  Kono Y,  Mehta A
Biochem Biophys Res Commun 2016 Jul 29;476(3):140-5
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27181357
PMC ID: PMC5067009

Linkage-Specific in Situ Sialic Acid Derivatization for N-Glycan Mass Spectrometry Imaging of Formalin-Fixed Paraffin-Embedded Tissues.

Holst S,  Heijs B,  de Haan N,  van Zeijl RJ,  Briaire-de Bruijn IH,  van Pelt GW,  Mehta AS,  Angel PM,  Mesker WE,  Tollenaar RA,  Drake RR,  Bovée JV,  McDonnell LA,  Wuhrer M
Anal Chem 2016 Jun 7;88(11):5904-13
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27145236
PMC ID: not available

Glycans related to the CA19-9 antigen are elevated in distinct subsets of pancreatic cancers and improve diagnostic accuracy over CA19-9.

Tang H,  Partyka K,  Hsueh P,  Sinha JY,  Kletter D,  Zeh H,  Huang Y,  Brand RE,  Haab BB
Cell Mol Gastroenterol Hepatol 2016 Feb 1;2(2):201-221.e15
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26998508
PMC ID: PMC4792034

Cellular O-Glycome Reporter/Amplification to explore O-glycans of living cells.

Kudelka MR,  Antonopoulos A,  Wang Y,  Duong DM,  Song X,  Seyfried NT,  Dell A,  Haslam SM,  Cummings RD,  Ju T
Nat Methods 2016 Jan;13(1):81-6
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26619014
PMC ID: PMC4697867

SULF2 Expression Is a Potential Diagnostic and Prognostic Marker in Lung Cancer.

Lui NS,  Yang YW,  van Zante A,  Buchanan P,  Jablons DM,  Lemjabbar-Alaoui H
PLoS One 2016;11(2):e0148911
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26882224
PMC ID: PMC4755530

Increased sialylation of site specific O-glycoforms of hemopexin in liver disease.

Sanda M,  Benicky J,  Wu J,  Wang Y,  Makambi K,  Ahn J,  Smith CI,  Zhao P,  Zhang L,  Goldman R
Clin Proteomics 2016;13:24
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 27688741
PMC ID: PMC5034550

Total syntheses of disulphated glycosphingolipid SB1a and the related monosulphated SM1a.

Hirose H,  Tamai H,  Gao C,  Imamura A,  Ando H,  Ishida H,  Feizi T,  Kiso M
Org Biomol Chem 2015 Dec 7;13(45):11105-17
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26399908
PMC ID: PMC4920060

Lung cancer: Biology and treatment options.

Lemjabbar-Alaoui H,  Hassan OU,  Yang YW,  Buchanan P
Biochim Biophys Acta 2015 Dec;1856(2):189-210
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26297204
PMC ID: PMC4663145

Two-Dimensional N-Glycan Distribution Mapping of Hepatocellular Carcinoma Tissues by MALDI-Imaging Mass Spectrometry.

Powers TW,  Holst S,  Wuhrer M,  Mehta AS,  Drake RR
Biomolecules 2015 Oct 15;5(4):2554-72
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26501333
PMC ID: PMC4693247

Upregulation of glycans containing 3' fucose in a subset of pancreatic cancers uncovered using fusion-tagged lectins.

Singh S,  Pal K,  Yadav J,  Tang H,  Partyka K,  Kletter D,  Hsueh P,  Ensink E,  Kc B,  Hostetter G,  Xu HE,  Bern M,  Smith DF,  Mehta AS,  Brand R,  Melcher K,  Haab BB
J Proteome Res 2015 Jun 5;14(6):2594-605
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25938165
PMC ID: PMC4511852

Glycan motif profiling reveals plasma sialyl-lewis x elevations in pancreatic cancers that are negative for sialyl-lewis A.

Tang H,  Singh S,  Partyka K,  Kletter D,  Hsueh P,  Yadav J,  Ensink E,  Bern M,  Hostetter G,  Hartman D,  Huang Y,  Brand RE,  Haab BB
Mol Cell Proteomics 2015 May;14(5):1323-33
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25733690
PMC ID: PMC4424402

Quantitative analysis of immunoglobulin subclasses and subclass specific glycosylation by LC-MS-MRM in liver disease.

Yuan W,  Sanda M,  Wu J,  Koomen J,  Goldman R
J Proteomics 2015 Feb 26;116:24-33
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25582524
PMC ID: PMC4329072

SULF2, a heparan sulfate endosulfatase, is present in the blood of healthy individuals and increases in cirrhosis.

Singer MS,  Phillips JJ,  Lemjabbar-Alaoui H,  Wang YQ,  Wu J,  Goldman R,  Rosen SD
Clin Chim Acta 2015 Feb 2;440:72-8
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25444749
PMC ID: PMC4305470

Targeted methods for quantitative analysis of protein glycosylation.

Goldman R,  Sanda M
Proteomics Clin Appl 2015 Feb;9(1-2):17-32
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25522218
PMC ID: PMC5780646

Glycomic analysis of membrane glycoproteins with bisecting glycosylation from ovarian cancer tissues reveals novel structures and functions.

Allam H,  Aoki K,  Benigno BB,  McDonald JF,  Mackintosh SG,  Tiemeyer M,  Abbott KL
J Proteome Res 2015 Jan 2;14(1):434-46
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25437919
PMC ID: PMC4286206

Functional impact of tumor-specific N-linked glycan changes in breast and ovarian cancers.

Guo H,  Abbott KL
Adv Cancer Res 2015;126:281-303
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25727151
PMC ID: not available

Simple sugars to complex disease--mucin-type O-glycans in cancer.

Kudelka MR,  Ju T,  Heimburg-Molinaro J,  Cummings RD
Adv Cancer Res 2015;126:53-135
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25727146
PMC ID: PMC5812724

Glycosylation alterations in lung and brain cancer.

Lemjabbar-Alaoui H,  McKinney A,  Yang YW,  Tran VM,  Phillips JJ
Adv Cancer Res 2015;126:305-44
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25727152
PMC ID: PMC6080207

Glycosylation and liver cancer.

Mehta A,  Herrera H,  Block T
Adv Cancer Res 2015;126:257-79
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25727150
PMC ID: PMC4634841

Structure-function analysis of hepatitis C virus envelope glycoproteins E1 and E2.

Nayak A,  Pattabiraman N,  Fadra N,  Goldman R,  Kosakovsky Pond SL,  Mazumder R
J Biomol Struct Dyn 2015;33(8):1682-94
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25245635
PMC ID: PMC5896302

The detection and discovery of glycan motifs in biological samples using lectins and antibodies: new methods and opportunities.

Tang H,  Hsueh P,  Kletter D,  Bern M,  Haab B
Adv Cancer Res 2015;126:167-202
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25727148
PMC ID: PMC4484597

Carbohydrate Microarrays Identify Blood Group Precursor Cryptic Epitopes as Potential Immunological Targets of Breast Cancer.

Wang D,  Tang J,  Liu S,  Huang J
J Immunol Res 2015;2015:510810
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 26539555
PMC ID: PMC4619957

Protein and site specificity of fucosylation in liver-secreted glycoproteins.

Pompach P,  Ashline DJ,  Brnakova Z,  Benicky J,  Sanda M,  Goldman R
J Proteome Res 2014 Dec 5;13(12):5561-9
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25265424
PMC ID: PMC4261953

Quantification of fucosylated hemopexin and complement factor H in plasma of patients with liver disease.

Benicky J,  Sanda M,  Pompach P,  Wu J,  Goldman R
Anal Chem 2014 Nov 4;86(21):10716-23
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25302577
PMC ID: PMC4222631

Immature truncated O-glycophenotype of cancer directly induces oncogenic features.

Radhakrishnan P,  Dabelsteen S,  Madsen FB,  Francavilla C,  Kopp KL,  Steentoft C,  Vakhrushev SY,  Olsen JV,  Hansen L,  Bennett EP,  Woetmann A,  Yin G,  Chen L,  Song H,  Bak M,  Hlady RA,  Peters SL,  Opavsky R,  Thode C,  Qvortrup K,  Schjoldager KT,  Clausen H,  Hollingsworth MA,  Wandall HH
Proc Natl Acad Sci U S A 2014 Sep 30;111(39):E4066-75
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25118277
PMC ID: PMC4191756

Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4.

Chandler KB,  Brnakova Z,  Sanda M,  Wang S,  Stalnaker SH,  Bridger R,  Zhao P,  Wells L,  Edwards NJ,  Goldman R
J Proteome Res 2014 Jul 3;13(7):3314-29
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24884609
PMC ID: PMC4084840

Carbohydrate sequence of the prostate cancer-associated antigen F77 assigned by a mucin O-glycome designer array.

Gao C,  Liu Y,  Zhang H,  Zhang Y,  Fukuda MN,  Palma AS,  Kozak RP,  Childs RA,  Nonaka M,  Li Z,  Siegel DL,  Hanfland P,  Peehl DM,  Chai W,  Greene MI,  Feizi T
J Biol Chem 2014 Jun 6;289(23):16462-77
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24753245
PMC ID: PMC4047413

Determination of carbohydrate structure recognized by prostate-specific F77 monoclonal antibody through expression analysis of glycosyltransferase genes.

Nonaka M,  Fukuda MN,  Gao C,  Li Z,  Zhang H,  Greene MI,  Peehl DM,  Feizi T,  Fukuda M
J Biol Chem 2014 Jun 6;289(23):16478-86
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24753248
PMC ID: PMC4047414

Uncovering cryptic glycan markers in multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE).

Wang D,  Bhat R,  Sobel RA,  Huang W,  Wang LX,  Olsson T,  Steinman L
Drug Dev Res 2014 May;75(3):172-88
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24648292
PMC ID: PMC4019697

Glyco-epitope Diversity: An Evolving Area of Glycomics Research and Biomarker Discovery.

Wang D
J Proteomics Bioinform 2014 Feb 25;7(2)
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 25378871
PMC ID: PMC4219575

Discrimination between adenocarcinoma and normal pancreatic ductal fluid by proteomic and glycomic analysis.

Porterfield M,  Zhao P,  Han H,  Cunningham J,  Aoki K,  Von Hoff DD,  Demeure MJ,  Pierce JM,  Tiemeyer M,  Wells L
J Proteome Res 2014 Feb 7;13(2):395-407
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24328148
PMC ID: PMC3946306

The neoglycolipid (NGL)-based oligosaccharide microarray system poised to decipher the meta-glycome.

Palma AS,  Feizi T,  Childs RA,  Chai W,  Liu Y
Curr Opin Chem Biol 2014 Feb;18:87-94
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24508828
PMC ID: PMC4105633

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.

Cole C,  Krampis K,  Karagiannis K,  Almeida JS,  Faison WJ,  Motwani M,  Wan Q,  Golikov A,  Pan Y,  Simonyan V,  Mazumder R
BMC Bioinformatics 2014 Jan 27;15:28
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24467687
PMC ID: PMC3916084

The challenge and promise of glycomics.

Cummings RD,  Pierce JM
Chem Biol 2014 Jan 16;21(1):1-15
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24439204
PMC ID: PMC3955176

Elevated levels of glycosylphosphatidylinositol (GPI) anchored proteins in plasma from human cancers detected by C. septicum alpha toxin.

Dolezal S,  Hester S,  Kirby PS,  Nairn A,  Pierce M,  Abbott KL
Cancer Biomark 2014 Jan 1;14(1):55-62
Major Program(s) or Research Group(s): Alliance of Glycobiologists for Cancer Research
PubMed ID: 24643042
PMC ID: PMC4157464