Performance of common genetic variants in breast-cancer risk models.

Author(s): Wacholder S,  Hartge P,  Prentice R,  Garcia-Closas M,  Feigelson HS,  Diver WR,  Thun MJ,  Cox DG,  Hankinson SE,  Kraft P,  Rosner B,  Berg CD,  Brinton LA,  Lissowska J,  Sherman ME,  Chlebowski R,  Kooperberg C,  Jackson RD,  Buckman DW,  Hui P,  Pfeiffer R,  Jacobs KB,  Thomas GD,  Hoover RN,  Gail MH,  Chanock SJ,  Hunter DJ

Journal: N Engl J Med

Date: 2010 Mar 18

Major Program(s) or Research Group(s):

PubMed ID: 20237344

PMC ID: PMC2921181

Abstract: BACKGROUND: Genomewide association studies have identified multiple genetic variants associated with breast cancer. The extent to which these variants add to existing risk-assessment models is unknown. METHODS: We used information on traditional risk factors and 10 common genetic variants associated with breast cancer in 5590 case subjects and 5998 control subjects, 50 to 79 years of age, from four U.S. cohort studies and one case-control study from Poland to fit models of the absolute risk of breast cancer. With the use of receiver-operating-characteristic curve analysis, we calculated the area under the curve (AUC) as a measure of discrimination. By definition, random classification of case and control subjects provides an AUC of 50%; perfect classification provides an AUC of 100%. We calculated the fraction of case subjects in quintiles of estimated absolute risk after the addition of genetic variants to the traditional risk model. RESULTS: The AUC for a risk model with age, study and entry year, and four traditional risk factors was 58.0%; with the addition of 10 genetic variants, the AUC was 61.8%. About half the case subjects (47.2%) were in the same quintile of risk as in a model without genetic variants; 32.5% were in a higher quintile, and 20.4% were in a lower quintile. CONCLUSIONS: The inclusion of newly discovered genetic factors modestly improved the performance of risk models for breast cancer. The level of predicted breast-cancer risk among most women changed little after the addition of currently available genetic information.